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Series GSE72266 Query DataSets for GSE72266
Status Public on Nov 12, 2015
Title A validated gene regulatory network and GWAS identifies early regulators of T-cell associated diseases (ChIP-Seq)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary For the purpose of the Gene Regulatory Network validation we have performed chromatin-immunoprecipitation sequencing (ChIP-Seq) experiment for three transcription factors; namely GATA3, MAF and MYB.
 
Overall design ChIP-Seq of GATA3, MAF and MYB in human naïve CD4+ T-cells differentiated toward Th1 and Th2 until day 6. Matched INPUT samples were also sequenced for each condition.
 
Contributor(s) Gustafsson M, Gawel DR, Alfredsson L, Baranzini S, Björkander J, Blomgran R, Hellberg S, Eklund D, Ernerudh J, Kockum I, Konstantinell A, Lahesmaa R, Lentini A, Liljenström R, Mattson L, Matussek A, Mellergård J, Mendez M, Olsson T, Pujana MA, Rasool O, Serra-Musach J, Stenmarker M, Tripathi S, Viitala M, Wang H, Zhang H, Nestor CE, Benson M
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Submission date Aug 21, 2015
Last update date May 15, 2019
Contact name Danuta Gawel
E-mail(s) danuta.gawel@liu.se
Organization name Linköping University
Street address Garnisonsvägen
City Linköping
ZIP/Postal code 58185
Country Sweden
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (11)
GSM1859068 MYB_Th1_rep1
GSM1859069 MYB_Th1_rep2
GSM1859070 MYB_Th2_rep1
This SubSeries is part of SuperSeries:
GSE60680 A validated gene regulatory network and GWAS identifies early regulators of T-cell associated diseases
Relations
BioProject PRJNA293550
SRA SRP062706

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72266_RAW.tar 3.4 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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