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Series GSE72056 Query DataSets for GSE72056
Status Public on Apr 05, 2016
Title Single cell RNA-seq analysis of melanoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To understand the diversity of expression states within melanoma tumors, we obtained freshly resected samples, dissagregated the samples, sorted into single cells and profiled them by single-cell RNA-seq.
 
Overall design Tumors were disaggregated, sorted into single cells, and profiled by Smart-seq2.

*Raw data files absent for samples GSM1851356 and GSM1851494.*

**Submitter declares reads will be made available through dbGaP.**

Please note that the processed data file (melanoma_single_cell_revised_v2.txt) contains two additional sample characteristis ("classification (based on inferred cnvs)" and "cell types for non-malignant cells").
 
Contributor(s) Tirosh I, Izar B
Citation(s) 27124452
Submission date Aug 13, 2015
Last update date Mar 26, 2019
Contact name Itay Tirosh
E-mail(s) Tirosh.itay@gmail.com
Organization name Broad Institute
Street address 7 cambridge center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (4645)
GSM1850539 Cy72_CD45_H02_S758_comb
GSM1850540 CY58_1_CD45_B02_S974_comb
GSM1850541 Cy71_CD45_D08_S524_comb
Relations
BioProject PRJNA292832

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72056_melanoma_single_cell_revised_v2.txt.gz 71.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data is available on Series record

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