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Series GSE71651 Query DataSets for GSE71651
Status Public on Sep 06, 2017
Title Next Generation Sequencing Transcriptomes of breast cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We performed high throughput transcriptome of breast cancer and normal tissues, identifying lincRNA associated molecular subtype with powerful capacity to distinct breast cancer population and predict prognosis. We also identified subtype-specific lincRNAs that may be a useful complement to intrinsic molecular subtype classification when divergence emerges among pathologists.Paired-end transcriptome sequencing were carried out on a cohort of 33 breast tissues from 11 groups including five breast cancer subtypes including luminal A (LA), luminal B (HER2 negative)(LB, HER2-), luminal B (HER2 positive) (LB, HER2+), HER2 and tripple negative breast cancer (TNB), adjacent noncancerous breast tissue (ANT, three samples for each subtype) and the complete normal breast tissues (three samples)
Overall design Examination of transcriptomes in 15 breast cancer and 18 normal tissues.
Contributor(s) Pang D, Xu S
Citation(s) 28738804, 30764831, 30999914, 31395854, 31801944
Submission date Aug 03, 2015
Last update date Dec 09, 2019
Contact name shipeng shang
Organization name Department of Breast Surgery, Harbin Medical University Cancer Hospital
Street address XueFu Road 194, NanGang District
City Harbin
ZIP/Postal code 150081
Country China
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (33)
GSM1846020 HER2_0_RNA-Seq
GSM1846021 HER2_1_RNA-Seq
GSM1846022 HER2_2_RNA-Seq
BioProject PRJNA292118
SRA SRP062132

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71651_isoforms.fpkm_table.txt.gz 42.5 Mb (ftp)(http) TXT
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