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Series GSE71585 Query DataSets for GSE71585
Status Public on Jan 04, 2016
Title Adult mouse cortical cell taxonomy by single cell transcriptomics
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Nervous systems are composed of numerous cell types, but the extent of cell type diversity is poorly understood. Here, we construct a cellular taxonomy of one cortical region, primary visual cortex, in adult mice based on single cell RNA-sequencing. We identify 49 transcriptomic cell types including 23 GABAergic, 19 glutamatergic and 7 non-neuronal types.
 
Overall design Single-cell RNA-Seq of adult mouse primary visual cortex
 
Contributor(s) Tasic B, Menon V, Nguyen TN, Kim TK, Yao Z, Gray LT, Hawrylycz M, Koch C, Zeng H
Citation(s) 26727548
Submission date Jul 31, 2015
Last update date May 15, 2019
Contact name Lucas T Gray
E-mail(s) lucasg@alleninstitute.org
Organization name Allen Institute for Brain Science
Department Molecular Genetics
Lab Tasic
Street address 615 Westlake Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (3)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL16417 Illumina MiSeq (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (1809)
GSM1839192 Calb2_tdTpositive_cell_1
GSM1839193 Calb2_tdTpositive_cell_2
GSM1839194 Calb2_tdTpositive_cell_3
Relations
BioProject PRJNA291624
SRA SRP061902

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71585_Clustering_Results.csv.gz 16.7 Kb (ftp)(http) CSV
GSE71585_ERCC_and_tdTomato_RPKM.csv.gz 450.2 Kb (ftp)(http) CSV
GSE71585_ERCC_and_tdTomato_counts.csv.gz 123.2 Kb (ftp)(http) CSV
GSE71585_RefSeq_RPKM.csv.gz 32.9 Mb (ftp)(http) CSV
GSE71585_RefSeq_TPM.csv.gz 35.1 Mb (ftp)(http) CSV
GSE71585_RefSeq_counts.csv.gz 34.4 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data is available on Series record

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