|
| Status |
Public on Sep 24, 2015 |
| Title |
Genome-wide maps of PBX3-binding site |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the high-throughput profiling of PBX3-binding sites under liver cancer stem cell reprogramming driven by PBX3 overexpression. By obtaining over four billion bases of sequence from chromatin immunoprecipitated DNA, we generated genome-wide PBX3-binding maps of SMMC-7721 cells. This study provides a prediction of regulated genes by the PBX3.
|
| |
|
| Overall design |
Examination of PBX3-binding sites in SMMC-7721 cell with overexpression PBX3. The fragmented DNA was precipitated with a PBX3 antibody.
|
| |
|
| Contributor(s) |
Zhang Z, Han H |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jul 23, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
haibo Han |
| E-mail(s) |
hanhaibohyd@sina.com.cn
|
| Organization name |
Peking University School of Oncology
|
| Department |
Department of Cell Biology
|
| Street address |
52 Fucheng Road, Haidian District
|
| City |
Peiking |
| ZIP/Postal code |
100142 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (1) |
|
| This SubSeries is part of SuperSeries: |
| GSE71262 |
Genome-wide maps of PBX3-binding sites and Quantitative Analysis of PBX3-Regulated Transcriptomes |
|
| Relations |
| BioProject |
PRJNA290722 |
| SRA |
SRP061456 |
