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Series GSE7124 Query DataSets for GSE7124
Status Public on Nov 09, 2007
Title Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Platform organism Glycine max
Sample organisms Glycine max; Phytophthora sojae
Experiment type Expression profiling by array
Summary Identify plant and pathogen genes differentially expressed during P. sojae infection of soybean cultivars differing in quantitative resistance, by using Affymetrix Soybean Genome Array analysis.
Keywords: genotypic variation on quantitative resistance
 
Overall design RNA samples from mock-inoculated soybean tissue contain 2%-16% spike-in RNA from Phytophthora sojae mycelium grown in liquid sucrose-salts medium.

4 Experimental Replicates x 8 cultivars x 2 Treatments (inoculated or mock) x 2 Timepoints (72hr or 120hr) = 128 samples in total
 
Contributor(s) Tyler BM, Maroof S, Dorrance A, Hoeschele I, Martin SS
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 23, 2007
Last update date Nov 22, 2016
Contact name sucheta Tripathy
E-mail sutripa@vbi.vt.edu
Phone 5402318138
Organization name Virginia Tech
Department Virginia Bioinformatics Institute
Lab Tyler lab
Street address 1, Washington street
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platforms (1)
GPL4592 [Soybean] Affymetrix Soybean Genome Array
Samples (128)
GSM171598 10_V.C.I.5, Experimental replicate V
GSM171599 10_W.I.M.3, Experimental replicate W
GSM171600 10_Y.K.M.5, Experimental replicate Y
Relations
BioProject PRJNA98403

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7124_RAW.tar 1.0 Gb (http)(custom) TAR (of CEL, CHP)
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data included within Sample table

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