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| Status |
Public on Jul 22, 2015 |
| Title |
Transcriptome differences in the rumen of beef steers with variation in feed intake and gain |
| Organism |
Bos taurus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA sequencing (RNA-Seq) was performed on rumen papillae from 16 steers with variation in gain and feed intake.
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| Overall design |
Sixteen rumen papillae samples were sequenced by Cofactor Genomics (St.Louis, MO).
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| Contributor(s) |
Kern RJ, Lindholm-Perry AK |
| Citation(s) |
27033587 |
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| Submission date |
Jul 21, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Amanda K Lindholm-Perrry |
| E-mail(s) |
amanda.lindholm@ars.usda.gov
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| Phone |
402-762-4189
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| Organization name |
USMARC
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| Department |
NEMRU
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| Street address |
State Spur 18D
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| City |
Clay Center |
| State/province |
NE |
| ZIP/Postal code |
68933 |
| Country |
USA |
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| Platforms (1) |
| GPL11153 |
Illumina Genome Analyzer II (Bos taurus) |
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| Samples (16)
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| GSM1828580 |
High gain, high intake [20113456] |
| GSM1828581 |
Low gain, high intake [20113446] |
| GSM1828582 |
Low gain, low intake [20113426] |
| GSM1828583 |
High gain, low intake [20113417] |
| GSM1828584 |
High gain, high intake [20113400] |
| GSM1828585 |
Low gain, high intake [20113247] |
| GSM1828586 |
High gain, high intake [20113212] |
| GSM1828587 |
Low gain, low intake [20113158] |
| GSM1828588 |
Low gain, low intake [20113092] |
| GSM1828589 |
Low gain, low intake [20113071] |
| GSM1828590 |
High gain, low intake [20113063] |
| GSM1828591 |
High gain, low intake [20113029] |
| GSM1828592 |
High gain, low intake [20113025] |
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| Relations |
| BioProject |
PRJNA290465 |
| SRA |
SRP061367 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE71153_projectLindholmPerry_USDA0001AL_master_list.txt.gz |
54.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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