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Series GSE70847 Query DataSets for GSE70847
Status Public on Jul 22, 2015
Title Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos
Organism Danio rerio
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary DNA methylation and histone modifications are epigenetic marks implicated in the complex regulation of vertebrate embryogenesis. The cross-talk between DNA methylation and Polycomb-dependent H3K27me3 histone mark has been reported in a number of organisms and both marks are known to be required for proper developmental progression. Here we provide genome-wide DNA methylation (MethylCap-seq) and H3K27me3 (ChIP-seq) maps for three stages (dome, 24hpf and 48hpf) of zebrafish (Danio rerio) embryogenesis, as well as all analytical and methodological details associated with the generation of this dataset.
 
Overall design DNA methylation (MethylCap-seq) and H3K27me3 (ChIP-seq) profling of zebrafish embryogenesis
 
Contributor(s) Bogdanovic O
Citation(s) 26697317
Submission date Jul 13, 2015
Last update date May 15, 2019
Contact name Ozren Bogdanovic
E-mail(s) o.bogdanovic@gmail.com
Organization name University of Western Australia
Department ARC CoE PEB - Plant Energy Biology
Street address 35 Stirling Highway
City Perth
State/province Western Australia
ZIP/Postal code WA 6009
Country Australia
 
Platforms (1)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
Samples (5)
GSM1820450 H3K27me3_ChIP-seq_dome
GSM1820451 H3K27me3_ChIP-seq_48hpf
GSM1820452 MethylCap-seq_dome
Relations
BioProject PRJNA289683
SRA SRP060753

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70847_RAW.tar 17.0 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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