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Series GSE70539 Query DataSets for GSE70539
Status Public on Jul 09, 2015
Title Microbial and Functional Diversity within the Phyllosphere of Espeletia sp. in Andean High Mountain Ecosystems
Platform organisms Bacteria; Archaea; Eukaryota; Viruses
Sample organism plant metagenome
Experiment type Genome variation profiling by array
Summary Functional profiles predicted based on taxonomic affiliations differed from those obtained by GeoChip microarray analysis, which separated community functional capacity based on plant location. The identified metabolic pathways provided insight regarding microbial strategies for colonization and survival in these ecosystems.
Overall design Sixteen samples analyzed.
Contributor(s) Zambrano MM, Restrepo S
Citation(s) 26746719
Submission date Jul 06, 2015
Last update date Jan 30, 2016
Contact name Carlos Alexander Ruiz Perez
Organization name Corporacion CorpoGen
Street address Cra. 5 #66A-34
City Bogota
State/province CUNDINAMARCA
ZIP/Postal code 110231
Country Colombia
Platforms (1)
GPL20663 GeoChip
Samples (16)
GSM1808761 Mature leaves - Endophyte 1
GSM1808762 Mature leaves - Endophyte 2
GSM1808763 Mature leaves - Endophyte 3
BioProject PRJNA289256

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70539_GeoChip_Raw.txt.gz 6.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data is available on Series record
Processed data included within Sample table

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