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Series GSE70386 Query DataSets for GSE70386
Status Public on Jun 21, 2017
Title Identification of promoters and enhancers induced by carbon nanotube exposure
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Cap Analysis of Gene Expression (CAGE) applied on carbon nanotubes exposed lung tissue to identify alternative promoter and enhancer usage after 24 hr of exposure in order to investigate the nature of the response observed in these mice.
 
Overall design C57BL/6 mice was exposed to vehicle or multi walled carbon nanotubes (MWCNT) by intratracheal installation. 5 mice was exposed to 162 ug of MWCNTs ( XNRI-7; lot05072001K28, Hadoga Chemical industry (formerly known as Mitsui) disolved in 0.9% NaCl and 10% v/v cellfree cellular broncho alveolar lavage (BAL) fluid collected from C57BL/6 mice. 6 mice was exposed to the previously decribed saline/BAL solution but without carbon nanotubes.
 
Contributor(s) Sandelin A, Bornholdt J
Citation(s) 28345861
Submission date Jun 29, 2015
Last update date Mar 16, 2020
Contact name Yun Chen
E-mail(s) cylsae@gmail.com
Organization name Chr Hansen A/S
Department Health & Nutrition
Street address Bøge Alle 10
City Hørsholm
ZIP/Postal code 2970
Country Denmark
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (11)
GSM1726365 CAGE_CONTROL_547
GSM1726366 CAGE_CONTROL_548
GSM1726367 CAGE_CONTROL_549
Relations
BioProject PRJNA288493
SRA SRP059956

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70386_RAW.tar 151.7 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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