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Series GSE70189 Query DataSets for GSE70189
Status Public on Jun 30, 2016
Title Human and mouse DRIP-seq and DRIPc-seq
Organisms Homo sapiens; Mus musculus
Experiment type Other
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This study profiles RNA:DNA hybrid formation in human and mouse cell lines.
 
Overall design DRIPc-seq (strand-specific R-loop mapping) was performed on human NT2 cells and mouse 3T3 cells. DRIP-seq (R-loop mapping) was performed on human NT2 and K562 and mouse E14 and 3T3 cell lines. MethylC-seq and RNA-seq were performed on NT2.
 
Contributor(s) Sanz LA, Lim Y, Hartono SR, Rajpurkar AR, Chedin F
Citation(s) 27373332
Submission date Jun 23, 2015
Last update date Mar 21, 2019
Contact name Yoong Wearn Lim
E-mail ywlim@ucdavis.edu
Organization name University of California, Davis
Department Molecular and Cellular Biology
Lab Chedin
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (3)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (13)
GSM1720613 NT2 DRIPc-seq, rep 1
GSM1720614 NT2 DRIPc-seq, rep 2
GSM1720615 NT2 DRIP-seq, 1
Relations
BioProject PRJNA287823
SRA SRP059800

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70189_NT2_DRIPc_peaks.bed.gz 736.9 Kb (ftp)(http) BED
GSE70189_RAW.tar 3.1 Gb (http)(custom) TAR (of BED, BEDGRAPH, WIG)
Raw data are available in SRA
Processed data provided as supplementary file
Processed data is available on Series record

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