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Series GSE70189 Query DataSets for GSE70189
Status Public on Jun 30, 2016
Title Human and mouse DRIP-seq and DRIPc-seq
Organisms Homo sapiens; Mus musculus
Experiment type Other
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This study profiles RNA:DNA hybrid formation in human and mouse cell lines.
Overall design DRIPc-seq (strand-specific R-loop mapping) was performed on human NT2 cells and mouse 3T3 cells. DRIP-seq (R-loop mapping) was performed on human NT2 and K562 and mouse E14 and 3T3 cell lines. MethylC-seq and RNA-seq were performed on NT2.
Contributor(s) Sanz LA, Lim Y, Hartono SR, Rajpurkar AR, Chedin F
Citation(s) 27373332, 31053798
Submission date Jun 23, 2015
Last update date May 15, 2019
Contact name Yoong Wearn Lim
Organization name University of California, Davis
Department Molecular and Cellular Biology
Lab Chedin
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (3)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (13)
GSM1720613 NT2 DRIPc-seq, rep 1
GSM1720614 NT2 DRIPc-seq, rep 2
GSM1720615 NT2 DRIP-seq, 1
BioProject PRJNA287823
SRA SRP059800

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70189_NT2_DRIPc_peaks.bed.gz 736.9 Kb (ftp)(http) BED
GSE70189_RAW.tar 3.1 Gb (http)(custom) TAR (of BED, BEDGRAPH, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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