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Series GSE70111 Query DataSets for GSE70111
Status Public on Aug 20, 2016
Title Transcriptional expression level during exponential growth phase in Kluyveromyces marxianus
Organism Kluyveromyces marxianus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary To understand functional roles of ncRNAs during exponential growth phase, we captured transcriptome changes by conducting strand-specific RNA-seq.
 
Overall design Directional RNA-seq (dUTP method by TruSeq®) were generated in two biological replicates by using Illumina MiSeq
 
Contributor(s) Cho Y, Lee E, Cho B
Citation(s) 26923790
Submission date Jun 22, 2015
Last update date May 15, 2019
Contact name Byung-Kwan Cho
Organization name KAIST
Lab Systems and Synthetic Biology Lab
Street address 291 Daehak-ro
City Daejeon
ZIP/Postal code 305-701
Country South Korea
 
Platforms (1)
GPL20596 Illumina MiSeq (Kluyveromyces marxianus)
Samples (6)
GSM1717185 RNA-seq EE rep1
GSM1717186 RNA-seq EE rep2
GSM1717187 RNA-seq ME rep1
Relations
BioProject PRJNA287655
SRA SRP059737

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70111_RNAseq_expression.txt.gz 253.3 Kb (ftp)(http) TXT
GSE70111_transcriptional_unit.gff.gz 165.9 Kb (ftp)(http) GFF
Raw data are available in SRA
Processed data is available on Series record

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