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| Status |
Public on Jun 17, 2017 |
| Title |
RNA-seq profiling of glomeruli, S1 proximal tubule, and the whole kidney of uninephrecomized rats |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We sequenced mRNAs in microdissected glomeruli and S1 proximal tubule segments and the whole remnant kidney of uninephrectomized rats.
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| Overall design |
Male Sprague-Dawley rats received either right nephrectomy or sham surgery. Rats were sacrificed 24h, 48h, and 72h after surgery. Total RNAs were isolated from microdissected glomeruli, S1 proximal tubules, and the whole left kidney for RNA sequencing.
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| Contributor(s) |
Lee JW, Knepper MA |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jun 18, 2015 |
| Last update date |
Jun 08, 2023 |
| Contact name |
Jae Wook Lee |
| E-mail(s) |
leejw4@mail.nih.gov
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| Organization name |
National Institutes of Health
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| Street address |
10 Center Drive, 6N314
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (1) |
| GPL14844 |
Illumina HiSeq 2000 (Rattus norvegicus) |
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| Samples (72)
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| GSM1715630 |
Nephrectomy, 24h, S1 proximal tubule, #2 |
| GSM1715631 |
Nephrectomy, 24h, glomerulus, #3 |
| GSM1715632 |
Nephrectomy, 24h, S1 proximal tubule, #3 |
| GSM1715633 |
Nephrectomy, 24h, glomerulus, #4 |
| GSM1715634 |
Nephrectomy, 24h, S1 proximal tubule, #4 |
| GSM1715635 |
Nephrectomy, 48h, glomerulus, #1 |
| GSM1715636 |
Nephrectomy, 48h, S1 proximal tubule, #1 |
| GSM1715637 |
Nephrectomy, 48h, glomerulus, #2 |
| GSM1715638 |
Nephrectomy, 48h, S1 proximal tubule, #2 |
| GSM1715639 |
Nephrectomy, 48h, glomerulus, #3 |
| GSM1715640 |
Nephrectomy, 48h, S1 proximal tubule, #3 |
| GSM1715641 |
Nephrectomy, 48h, glomerulus, #4 |
| GSM1715642 |
Nephrectomy, 48h, S1 proximal tubule, #4 |
| GSM1715643 |
Nephrectomy, 72h, glomerulus, #1 |
| GSM1715644 |
Nephrectomy, 72h, S1 proximal tubule, #1 |
| GSM1715645 |
Nephrectomy, 72h, glomerulus, #2 |
| GSM1715646 |
Nephrectomy, 72h, S1 proximal tubule, #2 |
| GSM1715647 |
Nephrectomy, 72h, glomerulus, #3 |
| GSM1715648 |
Nephrectomy, 72h, S1 proximal tubule, #3 |
| GSM1715649 |
Nephrectomy, 72h, glomerulus, #4 |
| GSM1715650 |
Nephrectomy, 72h, S1 proximal tubule, #4 |
| GSM1715651 |
Sham, 24h, glomerulus, #1 |
| GSM1715652 |
Sham, 24h, S1 proximal tubule, #1 |
| GSM1715653 |
Sham, 24h, glomerulus, #2 |
| GSM1715654 |
Sham, 24h, S1 proximal tubule, #2 |
| GSM1715655 |
Sham, 24h, glomerulus, #3 |
| GSM1715656 |
Sham, 24h, S1 proximal tubule, #3 |
| GSM1715657 |
Sham, 24h, glomerulus, #4 |
| GSM1715658 |
Sham, 24h, S1 proximal tubule, #4 |
| GSM1715659 |
Sham, 48h, glomerulus, #1 |
| GSM1715660 |
Sham, 48h, S1 proximal tubule, #1 |
| GSM1715661 |
Sham, 48h, glomerulus, #2 |
| GSM1715662 |
Sham, 48h, S1 proximal tubule, #2 |
| GSM1715663 |
Sham, 48h, glomerulus, #3 |
| GSM1715664 |
Sham, 48h, S1 proximal tubule, #3 |
| GSM1715665 |
Sham, 48h, glomerulus, #4 |
| GSM1715666 |
Sham, 48h, S1 proximal tubule, #4 |
| GSM1715667 |
Sham, 72h, glomerulus, #1 |
| GSM1715668 |
Sham, 72h, S1 proximal tubule, #1 |
| GSM1715669 |
Sham, 72h, glomerulus, #2 |
| GSM1715670 |
Sham, 72h, S1 proximal tubule, #2 |
| GSM1715671 |
Sham, 72h, glomerulus, #3 |
| GSM1715672 |
Sham, 72h, S1 proximal tubule, #3 |
| GSM1715673 |
Sham, 72h, glomerulus, #4 |
| GSM1715674 |
Sham, 72h, S1 proximal tubule, #4 |
| GSM1715675 |
Nephrectomy, 24h, #1, whole kidney |
| GSM1715676 |
Nephrectomy, 24h, #2, whole kidney |
| GSM1715677 |
Nephrectomy, 24h, #3, whole kidney |
| GSM1715678 |
Nephrectomy, 24h, #4, whole kidney |
| GSM1715679 |
Nephrectomy, 48h, #1, whole kidney |
| GSM1715680 |
Nephrectomy, 48h, #2, whole kidney |
| GSM1715681 |
Nephrectomy, 48h, #3, whole kidney |
| GSM1715682 |
Nephrectomy, 48h, #4, whole kidney |
| GSM1715683 |
Nephrectomy, 72h, #1, whole kidney |
| GSM1715684 |
Nephrectomy, 72h, #2, whole kidney |
| GSM1715685 |
Nephrectomy, 72h, #3, whole kidney |
| GSM1715686 |
Nephrectomy, 72h, #4, whole kidney |
| GSM1715687 |
Sham, 24h, #1, whole kidney |
| GSM1715688 |
Sham, 24h, #2, whole kidney |
| GSM1715689 |
Sham, 24h, #3, whole kidney |
| GSM1715690 |
Sham, 24h, #4, whole kidney |
| GSM1715691 |
Sham, 48h, #1, whole kidney |
| GSM1715692 |
Sham, 48h, #2, whole kidney |
| GSM1715693 |
Sham, 48h, #3, whole kidney |
| GSM1715694 |
Sham, 48h, #4, whole kidney |
| GSM1715695 |
Sham, 72h, #1, whole kidney |
| GSM1715696 |
Sham, 72h, #2, whole kidney |
| GSM1715697 |
Sham, 72h, #3, whole kidney |
| GSM1715698 |
Sham, 72h, #4, whole kidney |
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| Relations |
| BioProject |
PRJNA287461 |
| SRA |
SRP059653 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE70012_unilateral_nephrectomy_G_and_S1_RPKM.txt.gz |
7.1 Mb |
(ftp)(http) |
TXT |
| GSE70012_unilateral_nephrectomy_G_and_S1_htseqcount.txt.gz |
2.3 Mb |
(ftp)(http) |
TXT |
| GSE70012_unilateral_nephrectomy_wholekidney_FPKM.txt.gz |
3.3 Mb |
(ftp)(http) |
TXT |
| GSE70012_unilateral_nephrectomy_wholekidney_htseqcount.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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