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| Status |
Public on Sep 15, 2015 |
| Title |
In vivo recruitment analysis and a mutant strain without any group 2 σ factors reveal roles of different σ factors in cyanobacteria |
| Organism |
Synechocystis sp. PCC 6803 |
| Experiment type |
Expression profiling by array
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| Summary |
In eubacteria, replacement of one σ factor in the RNA polymerase (RNAP) holoenzyme by another one changes the transcription pattern. Cyanobacteria are eubacteria characterized by oxygenic photosynthesis and they typically encode numerous group 2 σ factors that closely resemble the essential primary σ factor. A mutant strain of the model cyanobacterium Synechocystis sp. PCC 6803 without functional group 2 σ factors (named as ΔsigBCDE) could not acclimate to heat, high salt, or bright light stress but in standard conditions ΔsigBCDE grew only 9% slower than the control strain. One-fifth of the genes in ΔsigBCDE were differently expressed compared to the control strain in standard growth conditions and several physiological changes in photosynthesis, and pigment and lipid compositions were detected. To directly analyze the σ factor content of RNAP holoenzyme in vivo, a His-tag was added to the γ subunit of RNAP in Synechocystis and RNAPs were collected. The results revealed that all group 2 σ factors were recruited by RNAP in standard conditions, but recruitment of SigB and SigC increased in heat stress, SigD in bright light, SigE in darkness and SigB, SigC and SigE in high salt, explaining the poor acclimation of ΔsigBCDE to these stress conditions.
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| Overall design |
Cells from cyanobacteria Synechocystis sp. PCC 6803 named as control strain (CS) and a mutant strain without any functional group 2 sigma factors, ΔsigBCDE, were harvested (A730=1, 40 mL) directly from standard growth conditions (continuous illumination at the PPFD of 40 µmol m-2s-1, 32°C, ambient CO2). From three to four independent experiments were performed at each conditions.
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| Contributor(s) |
Tyystjarvi T, Gunnelius L, Hakkila K, Matthijs HC |
| Citation(s) |
26354085, 29985458 |
| Submission date |
Jun 18, 2015 |
| Last update date |
May 17, 2019 |
| Contact name |
Taina Tyystjarvi |
| E-mail(s) |
taityy@utu.fi
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| Organization name |
University of Turku
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| Department |
Biochemistry
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| Lab |
Molecular Plant Biology
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| Street address |
Pharmacity/Itäinen Pitkäkatu 4 C, 6th floor
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| City |
Turku |
| ZIP/Postal code |
20520 |
| Country |
Finland |
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| Platforms (1) |
| GPL17595 |
Agilent-016989 Synechocystis array [ORF version] |
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| Samples (7)
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| Relations |
| BioProject |
PRJNA287323 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE69981_RAW.tar |
5.3 Mb |
(http)(custom) |
TAR (of TXT) |
| Raw data provided as supplementary file |
| Processed data included within Sample table |
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