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Series GSE69962 Query DataSets for GSE69962
Status Public on Jan 02, 2016
Title CTCF ChIP-seq in human monocytic THP-1 cells with replicates (4)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq for the insulator protein CTCF in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)
Overall design THP-1 cells were treated for 24 h with 100 nM 1,25(OH)2D3 before ChIP assay
Contributor(s) Seuter S, Neme A, Carlberg C
Citation(s) 26715761, 27569350, 33753848, 35325193
Submission date Jun 17, 2015
Last update date Apr 27, 2022
Contact name Carsten Carlberg
Organization name University of Eastern Finland
Department Institute of Biomedicine
Street address Yliopistonranta 1D
City Kuopio
ZIP/Postal code 70211
Country Finland
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (9)
GSM1714039 THP-1, CTCF ChIP-seq, 24 h EtOH
GSM1714040 THP-1, CTCF ChIP-seq, 24 h 1,25(OH)2D3
GSM1714041 THP-1, input
This SubSeries is part of SuperSeries:
GSE69303 1,25(OH)2D3 time course in THP-1 cells
BioProject PRJNA287278
SRA SRP059606

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69962_RAW.tar 2.0 Gb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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