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Series GSE69962 Query DataSets for GSE69962
Status Public on Jan 02, 2016
Title CTCF ChIP-seq in human monocytic THP-1 cells with replicates (4)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq for the insulator protein CTCF in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)
 
Overall design THP-1 cells were treated for 24 h with 100 nM 1,25(OH)2D3 before ChIP assay
 
Contributor(s) Seuter S, Neme A, Carlberg C
Citation(s) 26715761, 27569350
Submission date Jun 17, 2015
Last update date May 15, 2019
Contact name Carsten Carlberg
E-mail(s) carsten.carlberg@uef.fi
Organization name University of Eastern Finland
Department Institute of Biomedicine
Street address Yliopistonranta 1D
City Kuopio
ZIP/Postal code 70211
Country Finland
 
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (9)
GSM1714039 THP-1, CTCF ChIP-seq, 24 h EtOH
GSM1714040 THP-1, CTCF ChIP-seq, 24 h 1,25(OH)2D3
GSM1714041 THP-1, input
This SubSeries is part of SuperSeries:
GSE69303 1,25(OH)2D3 time course in THP-1 cells
Relations
BioProject PRJNA287278
SRA SRP059606

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69962_RAW.tar 2.0 Gb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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