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Series GSE69798 Query DataSets for GSE69798
Status Public on Jun 03, 2016
Title CTCF binding profiles in MEF cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We sequenced CTCF binding sites in Akt1+/+ or Akt1-/- mouse embryonic fibroblast (MEF) cell line.
 
Overall design The information of CTCF binding sites in wildtype (WT) and Akt1-/- MEF cells was generated by deep sequencing, using Illumina GAIIx.
 
Contributor(s) Roh T, Hong C, Seo S, Min H, Kong K, Lee J, Bae SS, Kim MH
Citation(s) 27080371
Submission date Jun 11, 2015
Last update date May 15, 2019
Contact name Tae-Young Roh
Organization name Ewha Womans University
Department Life Sciences
Lab Sysgem Genomics
Street address 52 Ewhayeodae-gil, Seodaemun-gu
City Seoul
State/province --- Select One ---
ZIP/Postal code 03760
Country South Korea
 
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (2)
GSM1709004 CFCF-WT
GSM1709005 CFCF-KO
Relations
BioProject PRJNA286789
SRA SRP059388

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69798_RAW.tar 98.6 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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