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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 03, 2016 |
| Title |
CTCF binding profiles in MEF cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We sequenced CTCF binding sites in Akt1+/+ or Akt1-/- mouse embryonic fibroblast (MEF) cell line.
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| Overall design |
The information of CTCF binding sites in wildtype (WT) and Akt1-/- MEF cells was generated by deep sequencing, using Illumina GAIIx.
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| Contributor(s) |
Roh T, Hong C, Seo S, Min H, Kong K, Lee J, Bae SS, Kim MH |
| Citation(s) |
27080371 |
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| Submission date |
Jun 11, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Tae-Young Roh |
| Organization name |
Ewha Womans University
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| Department |
Life Sciences
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| Lab |
Sysgem Genomics
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| Street address |
52 Ewhayeodae-gil, Seodaemun-gu
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| City |
Seoul |
| State/province |
--- Select One --- |
| ZIP/Postal code |
03760 |
| Country |
South Korea |
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| Platforms (1) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA286789 |
| SRA |
SRP059388 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE69798_RAW.tar |
98.6 Mb |
(http)(custom) |
TAR (of BEDGRAPH) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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