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Series GSE6901 Query DataSets for GSE6901
Status Public on May 17, 2007
Title Expression data for stress treatment in rice seedlings
Organism Oryza sativa
Experiment type Expression profiling by array
Summary Drought, salinity and sub-optimal temperatures are stresses that cause adverse effects on the growth of plants and the productivity of crops. In this study, we have analyzed the expression profiles of rice genes under control and abiotic stress conditions using microarray technology to identify the genes differentially expressed during various abiotic stresses.
Keywords: Stress treatment
 
Overall design Seven-day-old light-grown rice seedlings grown under controlled conditions and those subjected to various abiotic stress conditions were used for RNA extraction and hybridization on Affymetrix microarrays. Three biological replicates of each sample were used for microarray analysis. For salt treatment (SS), the rice seedlings were transferred to a beaker containing 200 mM NaCl solution for 3 h. For desiccation (DS), rice seedlings were dried for 3 h between folds of tissue paper at 28±1 degree C, in a culture room. For cold treatment (CS), the seedlings were kept at 4±1 degree C for 3 h. The seedlings kept in water for 3 h, at 28±1 degree C, served as control (Seedling).
 
Contributor(s) Tyagi AK, Kapoor S, Khurana JP, Ray S
Citation(s) 17293439, 19490115, 19788421, 21554676, 24398598, 23638098, 22363522, 20637108, 17640358
Submission date Jan 29, 2007
Last update date Apr 16, 2020
Contact name Akhilesh K. Tyagi
E-mail(s) akhilesh@genomeindia.org
Phone 91-11-24113216
Fax 91-11-24119430
Organization name University of Delhi South Campus
Department Department of Plant Molecular Biology
Lab Plant Genomics and Molecular Biology
Street address Benito Juarez Road
City New Delhi
State/province Delhi
ZIP/Postal code 110 021
Country India
 
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (12)
GSM159259 7-day-old Seedling, biological rep 1
GSM159260 7-day-old Seedling, biological rep 2
GSM159261 7-day-old Seedling, biological rep 3
Relations
BioProject PRJNA98147

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE6901_RAW.tar 52.3 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file

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