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GEO accession:
Series GSE68576
Query DataSets for GSE68576
Status
Public on Jan 01, 2016
Title
A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways
Organism
Mus musculus
Experiment type
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
26975309
Submission date
May 05, 2015
Last update date
May 15, 2019
Contact name
Tarmo Äijö
Organization name
Flatiron Institute
Department
Center for Computational Biology
Street address
162 5th Avenue
City
New York
ZIP/Postal code
10010
Country
USA
Platforms (1)
GPL16417
Illumina MiSeq (Mus musculus)
Samples (30)
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More...
GSM1675779
Tet2 knock-down BS-seq replicate 1
GSM1675780
Tet2 knock-down BS-seq replicate 2
GSM1675781
Tet2 knock-down BS-seq replicate 3
GSM1675782
Tet2 knock-down oxBS-seq replicate 1
GSM1675783
Tet2 knock-down oxBS-seq replicate 2
GSM1675784
Tet2 knock-down oxBS-seq replicate 3
GSM1675785
v6.5 knock-down BS-seq replicate 1
GSM1675786
v6.5 knock-down BS-seq replicate 2
GSM1675787
v6.5 knock-down BS-seq replicate 3
GSM1675788
v6.5 knock-down oxBS-seq replicate 1
GSM1675789
v6.5 knock-down oxBS-seq replicate 2
GSM1675790
v6.5 knock-down oxBS-seq replicate 3
GSM1675791
DP BS-seq replicate 1
GSM1675792
DP BS-seq replicate 2
GSM1675793
DP BS-seq replicate 3
GSM1675794
DP oxBS-seq replicate 1
GSM1675795
DP oxBS-seq replicate 2
GSM1675796
DP oxBS-seq replicate 3
GSM1675797
CD4 naïve BS-seq replicate 1
GSM1675798
CD4 naïve BS-seq replicate 2
GSM1675799
CD4 naïve BS-seq replicate 3
GSM1675800
CD4 naïve oxBS-seq replicate 1
GSM1675801
CD4 naïve oxBS-seq replicate 2
GSM1675802
CD4 naïve oxBS-seq replicate 3
GSM1675803
CD4 SP BS-seq replicate 1
GSM1675804
CD4 SP BS-seq replicate 2
GSM1675805
CD4 SP BS-seq replicate 3
GSM1675806
CD4 SP oxBS-seq replicate 1
GSM1675807
CD4 SP oxBS-seq replicate 2
GSM1675808
CD4 SP oxBS-seq replicate 3
This SuperSeries is composed of the following SubSeries:
GSE68574
A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [mESCs]
GSE68575
A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [T-cells]
Relations
BioProject
PRJNA283126
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE68576_RAW.tar
670.0 Kb
(http)
(custom)
TAR (of TXT)
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