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| Status |
Public on Dec 31, 2015 |
| Title |
Genome-wide mapping of TEL-AML1 targets in acute leukemia |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Around 20-25% of childhood acute lymphoblastic leukemias carry the TEL-AML1 (TA) fusion gene. It is a fusion of two central hematopoietic transcription factors, TEL (ETV6) and AML1 (RUNX1). Despite its prevalence, the exact genomic targets of TA have remained elusive. We evaluated gene loci and enhancers targeted by TA genome-wide in precursor B acute leukemia cells using global nuclear run-on sequencing (GRO-seq).
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| Overall design |
Nascent RNA expression profiles were generated with GRO-seq after TEL-AML1 expression in the Nalm6 pre-B-ALL cell line in four different time points (0, 4, 12 and 24 h). TEL-AML1-mut and luciferase induction cell lines were used as controls. Two replicates were included for all six samples.
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| Contributor(s) |
Heinäniemi M, Teppo S, Lohi O |
| Citation(s) |
27620872 |
| |
| Submission date |
Apr 01, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Merja Heinäniemi |
| Organization name |
university of eastern finland
|
| Street address |
Yliopistonranta 1
|
| City |
Kuopio |
| ZIP/Postal code |
70210 |
| Country |
Finland |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA280122 |
| SRA |
SRP056802 |
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