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Series GSE66900 Query DataSets for GSE66900
Status Public on May 18, 2015
Title Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
Organisms Strongylocentrotus purpuratus; Danio rerio; Mus musculus
Experiment type Other
Summary Comparison of conserved TAD boundaries reveals that diverging CTCF sites is an evolutionary conserved signature associated with TAD borders
 
Overall design 4C-seq samples for six gene family promoters in different samples: E9.5 and E14.5 mouse embryos ; 24hpf, 48hpf, 80%epiboly and Dome zebrafish embryos ; 48hpf S.purpuratus embryos
 
Contributor(s) Gómez-Marín C, Tena JJ, Domínguez-Acemel R, Naranjo S, Maeso I, De la Calle-Mustienes E, Beccari L, Vielmas E, López-Mayorga M, Bovolenta P, Carvajal JJ, Gómez-Skarmeta JL
Citation(s) 26034287
Submission date Mar 13, 2015
Last update date May 15, 2019
Contact name Carlos Gómez
E-mail(s) cgommar@hotmail.com
Organization name Centro Andaluz de Biologia del Desarrollo
Street address Crta Utrera km 1
City Seville
State/province Seville
ZIP/Postal code 41013
Country Spain
 
Platforms (3)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
GPL19892 Illumina HiSeq 2000 (Strongylocentrotus purpuratus)
Samples (63)
GSM1634531 Mouse_E14.5 (1)
GSM1634532 Mouse_E14.5 (2)
GSM1634533 Mouse_E9.5 (3)
Relations
BioProject PRJNA278402
SRA SRP056206

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE66900_RAW.tar 153.8 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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