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Series GSE66900 Query DataSets for GSE66900
Status Public on May 18, 2015
Title Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
Organisms Strongylocentrotus purpuratus; Danio rerio; Mus musculus
Experiment type Other
Summary Comparison of conserved TAD boundaries reveals that diverging CTCF sites is an evolutionary conserved signature associated with TAD borders
Overall design 4C-seq samples for six gene family promoters in different samples: E9.5 and E14.5 mouse embryos ; 24hpf, 48hpf, 80%epiboly and Dome zebrafish embryos ; 48hpf S.purpuratus embryos
Contributor(s) Gómez-Marín C, Tena JJ, Domínguez-Acemel R, Naranjo S, Maeso I, De la Calle-Mustienes E, Beccari L, Vielmas E, López-Mayorga M, Bovolenta P, Carvajal JJ, Gómez-Skarmeta JL
Citation(s) 26034287
Submission date Mar 13, 2015
Last update date May 15, 2019
Contact name Carlos Gómez
Organization name Centro Andaluz de Biologia del Desarrollo
Street address Crta Utrera km 1
City Seville
State/province Seville
ZIP/Postal code 41013
Country Spain
Platforms (3)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
GPL19892 Illumina HiSeq 2000 (Strongylocentrotus purpuratus)
Samples (63)
GSM1634531 Mouse_E14.5 (1)
GSM1634532 Mouse_E14.5 (2)
GSM1634533 Mouse_E9.5 (3)
BioProject PRJNA278402
SRA SRP056206

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE66900_RAW.tar 153.8 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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