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GEO accession:
Series GSE66534
Query DataSets for GSE66534
Status
Public on Dec 10, 2015
Title
The histone chaperone CAF-1 safeguards somatic cell identity during transcription factor-induced reprogramming
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Contributor(s)
Hochedlinger K
,
Cheloufi S
Citation(s)
26659182
Submission date
Mar 04, 2015
Last update date
May 15, 2019
Contact name
Peter J Park
E-mail(s)
peter_park@harvard.edu
Phone
617-432-7373
Organization name
Harvard Medical School
Department
Center for Biomedical Informatics
Street address
10 Shattuck St
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (2)
GPL16570
[MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [transcript (gene) version]
GPL17021
Illumina HiSeq 2500 (Mus musculus)
Samples (73)
Less...
More...
GSM1624617
ATAC_seq_Chaf1a.166_rep1_day3
GSM1624618
ATAC_seq_Chaf1a.166_rep2_day3
GSM1624619
ATAC_seq_Chaf1a.166_rep1_day6
GSM1624620
ATAC_seq_Chaf1a.166_rep2_day6
GSM1624621
ATAC_seq_Renilla_rep1_day3
GSM1624622
ATAC_seq_Renilla_rep2_day3
GSM1624623
ATAC_seq_Renilla_rep1_day6
GSM1624624
ATAC_seq_Renilla_rep2_day6
GSM1624625
ATAC_seq_iPSC
GSM1624626
ChIP_seq_Chaf1a.166_Sox2_IP_day3
GSM1624627
ChIP_seq_Chaf1a.166_Sox2_input_day3
GSM1624628
ChIP_seq_Renilla_Sox2_IP_day3
GSM1624629
ChIP_seq_Renilla_Sox2_input_day3
GSM1624630
Sono_seq_CAF-1_rep1_day3
GSM1624631
Sono_seq_CAF-1_rep2_day3
GSM1624632
Sono_seq_CAF-1_rep3_day3
GSM1624633
Sono_seq_Renilla_rep1_day3
GSM1624634
Sono_seq_Renilla_rep2_day3
GSM1624635
Sono_seq_Renilla_rep3_day3
GSM1866625
RNA_seq_Renilla_day0-rep1
GSM1866626
RNA_seq_Renilla_day0-rep2
GSM1866627
RNA_seq_Renilla_day0-rep3
GSM1866628
RNA_seq_CAF1_day0-rep1
GSM1866629
RNA_seq_CAF1_day0-rep2
GSM1866630
RNA_seq_CAF1_day0-rep3
GSM1866631
RNA_seq_Renilla_day3-rep1
GSM1866632
RNA_seq_Renilla_day3-rep2
GSM1866633
RNA_seq_Renilla_day3-rep3
GSM1866634
RNA_seq_CAF1_day3-rep1
GSM1866635
RNA_seq_CAF1_day3-rep2
GSM1866636
RNA_seq_CAF1_day3-rep3
GSM1866637
RNA_seq_Renilla_day6-rep1
GSM1866638
RNA_seq_Renilla_day6-rep2
GSM1866639
RNA_seq_Renilla_day6-rep3
GSM1866640
RNA_seq_CAF1_day6-rep1
GSM1866641
RNA_seq_CAF1_day6-rep2
GSM1866642
RNA_seq_CAF1_day6-rep3
GSM1866643
ChIP_seq_Renilla_day0_H3K9me3_input
GSM1866644
ChIP_seq_ChaF1a_166_day0_H3K9me3_input
GSM1866645
ChIP_seq_ChaF1a_2122_day0_H3K9me3_input
GSM1866646
ChIP_seq_Renilla_day3_H3K9me3_input
GSM1866647
ChIP_seq_ChaF1a_166_day3_H3K9me3_input
GSM1866648
ChIP_seq_ChaF1a_2122_day3_H3K9me3_input
GSM1866649
ChIP_seq_Renilla_day0_H3K9me3_IP
GSM1866650
ChIP_seq_ChaF1a_166_day0_H3K9me3_IP
GSM1866651
ChIP_seq_ChaF1a_2122_day0_H3K9me3_IP
GSM1866652
ChIP_seq_Renilla_day3_H3K9me3_IP
GSM1866653
ChIP_seq_ChaF1a_166_day3_H3K9me3_IP
GSM1866654
ChIP_seq_ChaF1a_2122_day3_H3K9me3_IP
GSM1867729
ATAC_seq_Chaf1a.2122_rep1_day3
GSM1867730
ATAC_seq_Chaf1a.2122_rep2_day3
GSM1867731
ATAC_seq_Chaf1a.2122_rep1_day6
GSM1867732
ATAC_seq_Chaf1a.2122_rep2_day6
GSM1867733
ATAC_seq_Chaf1a.166_rep1_day0
GSM1867734
ATAC_seq_Chaf1a.166_rep2_day0
GSM1867735
ATAC_seq_Chaf1a.2122_rep1_day0
GSM1867736
ATAC_seq_Chaf1a.2122_rep2_day0
GSM1867737
ATAC_seq_Renilla_rep1_day0
GSM1867738
ATAC_seq_Renilla_rep2_day0
GSM1867739
ChIP_seq_Chaf1a.2122_Sox2_IP_day3
GSM1867740
ChIP_seq_Chaf1a.2122_Sox2_input_day3
GSM1869338
day3 renilla control Rep1
GSM1869339
day3 Chaf1a knockdown Rep1
GSM1869340
day6 renilla control Rep1
GSM1869341
day6 Chaf1a knockdown Rep1
GSM1869342
day3 renilla control Rep2
GSM1869343
day3 Chaf1a knockdown Rep2
GSM1869344
day6 renilla control Rep2
GSM1869345
day6 Chaf1a knockdown Rep2
GSM1869346
day3 renilla control Rep3
GSM1869347
day3 Chaf1a knockdown Rep3
GSM1869348
day6 renilla control Rep3
GSM1869349
day6 Chaf1a knockdown Rep3
This SuperSeries is composed of the following SubSeries:
GSE72741
CAF-1 safeguards somatic cell identity during factor-induced reprogramming
GSE72744
The histone chaperone CAF-1 safeguards somatic cell identity during transcription factor-induced reprogramming (sequencing)
Relations
BioProject
PRJNA295060
Download family
Format
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE66534_RAW.tar
2.6 Gb
(http)
(custom)
TAR (of BW, CEL)
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