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Series GSE65847 Query DataSets for GSE65847
Status Public on Dec 01, 2015
Title Selective coregulator function for different steroid receptors and restriction of steroid receptor chromatin occupancy by Hic-5
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We investigate the relationship between GR and Hic5 and identify classes of genes that respond differently when cells are induced with hormone and when Hic5 is knocked down.
 
Overall design GR ChIP-seq with and without depletion of Hic5
 
Contributor(s) Chodankar R, Wu D, Stallcup MR
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Submission date Feb 11, 2015
Last update date May 15, 2019
Contact name Dai-Ying Wu
Organization name University of Southern California
Department Biochemistry
Lab Stallcup
Street address 1441 Eastlake Ave, NOR 6314
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (6)
GSM1607525 GR siNS rep1
GSM1607526 GR siHic5 rep1
GSM1607527 GR siNS rep2
Relations
BioProject PRJNA275213
SRA SRP054248

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65847_RAW.tar 32.0 Mb (http)(custom) TAR (of BEDGRAPH)
GSE65847_shifted2_siHic5_rep0.bedgraph.gz 32.0 Mb (ftp)(http) BEDGRAPH
GSE65847_shifted2_siNS_rep0.bedgraph.gz 26.1 Mb (ftp)(http) BEDGRAPH
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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