|
| Status |
Public on Sep 15, 2016 |
| Title |
Multiple hierarchies of Polycomb targeting to Drosophila genome (Part 1) |
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
PcG proteins are critical epigenetic regulators of development. Here we compared genomic distribution of E(z) protein in cultured Drosophila cells lacking Psc/Su(z)2 proteins to that of the wild type.
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| |
|
| Overall design |
ChIP of E(z) protein coupled to next-generation sequencing from wild-type and Psc/Su(z)2 - null cultured cells. Done in two replicates, with DNA from corresponding chromatin inputs sequenced as a control.
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| |
|
| Contributor(s) |
Schwartz YB, Kahn TG |
| Citation(s) |
27557709 |
| |
| Submission date |
Feb 03, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Yuri B Schwartz |
| Organization name |
Umeå University
|
| Street address |
Byggnad 6L, NUS
|
| City |
Umeå |
| ZIP/Postal code |
90187 |
| Country |
Sweden |
| |
|
| Platforms (1) |
| GPL16479 |
Illumina MiSeq (Drosophila melanogaster) |
|
| Samples (8)
|
| GSM1600200 |
E(z)_ChIP-seq_in_Psc-minus_cells_replicate1 [part 1] |
| GSM1600201 |
Input-seq_in_Psc-minus_cells_replicate1 [part 1] |
| GSM1600202 |
E(z)_ChIP-seq_in_Psc-minus_cells_replicate2 [part 1] |
| GSM1600203 |
Input-seq_in_Psc-minus_cells_replicate2 [part 1] |
| GSM1600204 |
E(z)_ChIP-seq_in_wild-type_cells_replicate1 [part 1] |
| GSM1600205 |
Input-seq_in_wild-type_cells_replicate1 [part 1] |
| GSM1600206 |
E(z)_ChIP-seq_in_wild-type_cells_replicate2 [part 1] |
| GSM1600207 |
Input-seq_in_wild-type_cells_replicate2 [part 1] |
|
| This SubSeries is part of SuperSeries: |
| GSE83248 |
Interdependence of PRC1 and PRC2 for recruitment to Polycomb Response Elements |
|
| Relations |
| BioProject |
PRJNA274378 |
| SRA |
SRP053110 |
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