|
| Status |
Public on Feb 03, 2015 |
| Title |
Ectopic CENP-A nucleosomes localize to transcription factor hotspots and subtelomeric sites in human cancer cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Comparison of histone variant CENP-A in different cell lines vs. DHS profiles from same cell lines. Mock IPs included.
|
| |
|
| Overall design |
Profiles of ectopic CENP-A IP after pre-clearing with CENP-B IPs, or profiles of DHS regions from mid-log culture SW480 colorectal cancer cell lines, HeLa cervical cancer cell lines, and EpiCo normal colon cell line were generated using deep sequencing after Mnase-based ChIP, in replicates, on the Illumina platform.
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| |
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| Contributor(s) |
Dalal Y, Athwal R, Walkiewicz M, Baek S, Fu S, Bui M, Camps J, Sung M, Ried T |
| Citation(s) |
25788983 |
| |
| Submission date |
Jan 30, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Songjoon Baek |
| Organization name |
NCI / NIH
|
| Department |
CCR
|
| Lab |
LRBGE
|
| Street address |
41 Library Drive
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (10)
|
|
| Relations |
| BioProject |
PRJNA274285 |
| SRA |
SRP053057 |
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