GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE65481 Query DataSets for GSE65481
Status Public on Nov 30, 2015
Title Human Embryo Single Cell Transcriptome Analysis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We sorted 2PN stage human embryos by predicted viability using a noninvasive measurement we previously developed. We then performed RNA-seq on each embryo (which was a single cell) and looked for differences in expression between viable and nonviable embryos.
Overall design We sequenced the transcriptomes of 22 human zygotes (2PN stage) embryos, of which 11 were predicted nonviable and 11 were predicted viable. We excluded 5 which had no siblings in this data set. From the remaining 17 embryos, we analyzed the set of genes that was differentially expressed between those predicted viable and those predicted nonviable.
Contributor(s) Yanez LZ, Han J, Behr BB, Reijo Pera RA, Camarillo DB
Citation(s) 26904963
Submission date Jan 30, 2015
Last update date May 15, 2019
Contact name Livia Zarnescu Yanez
Organization name Stanford University
Department Bioengineering
Lab Camarillo Lab
Street address 443 Via Ortega
City Stanford
State/province California
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (22)
GSM1598282 S1
GSM1598283 S2
GSM1598284 S3
BioProject PRJNA274140
SRA SRP053004

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65481_RAW.tar 2.0 Mb (http)(custom) TAR (of TXT)
GSE65481_adjusted_expression_data.txt.gz 1.7 Mb (ftp)(http) TXT
GSE65481_adjusted_expression_qvals.txt.gz 139.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap