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Series GSE65267 Query DataSets for GSE65267
Status Public on Oct 23, 2015
Title Next Generation Sequencing identifies Cdh11 and Mrc1 as novel translational biomarkers of kidney fibrosis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Chronic kidney disease (CKD) is the gradual, asymptomatic loss of kidney function and current tests only identify it when significant loss has already happened. Using RNA sequencing in a mouse model of folic acid (FA) induced nephropathy, here we report the identification of 10 genes that track kidney fibrosis development, the common pathological finding in CKD patients. The gene expression of all 10 candidates was confirmed to be significantly high (~ 10-150 fold) in three well-established and mechanistically distinct mouse models of kidney fibrosis. Protein expression was also high in the FA model as well as patients with biopsy-proven kidney fibrosis. The specificity of these 10 candidates for kidney fibrosis was demonstrated by showing a very modest (~ 2-5 fold) increase in the mouse models of acute kidney injury as well as following liver fibrosis in mice and humans. Using targeted selected reaction monitoring mass spectrometry (SRM-MS) we found that 3 out of 10, cadherin 11 (CDH11), mannose receptor C1 (MRC1), phospholipid transfer protein (PLTP), are detectable in human urine. Furthermore, the levels of CDH11 and MRC1 are able to distinguish patients with chronic kidney disease from healthy individuals (n = 78, p<0.01). In summary, we report the identification of CDH11 and MRC1 as novel non-invasive biomarkers of CKD.
Overall design mRNA sequencing of mouse kidney before and at various time points (1,2,3,7 & 14 days) after intraperitoneal treatment with folic acid.
Contributor(s) Craciun FL, Vaidya VS, Hutchinson JN
Citation(s) 26449608
Submission date Jan 24, 2015
Last update date May 15, 2019
Contact name John N Hutchinson
Organization name Harvard Chan School of Public Health
Street address 677 Huntington Avenue
City Boston
State/province Massachusetts
ZIP/Postal code 02215
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (18)
GSM1591197 Normalrep1
GSM1591198 Normalrep2
GSM1591199 Normalrep3
BioProject PRJNA273550
SRA SRP052803

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Supplementary file Size Download File type/resource
GSE65267_RAW.tar 5.9 Mb (http)(custom) TAR (of TXT)
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Raw data are available in SRA
Processed data provided as supplementary file

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