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Series GSE64881 Query DataSets for GSE64881
Status Public on Mar 08, 2017
Title Genome Wide Characterization of Genome Organization in Mouse ES cells
Organisms Mus musculus; other sequences
Experiment type Genome variation profiling by high throughput sequencing
Other
Summary The three-dimensional folding of genomes in the eukaryotic nucleus can influence the expression of genes. We used a new method to determine interactions between different chromatin regions genome-wide. Using a simple statistical model, we determine the subset of those interactions which represent stable contacts. We find an enrichment in contacts between active genes, between Polycomb-repressed genes, between enhancer elements and between enhancers and active genes.
 
Overall design We used a new method to detect interactions from 490 46C Mouse ES cell derived samples
 
Contributor(s) Beagrie R, Scialdone A, Chotalia M, Schueler M, Nicodemi M, Pombo A
Citation(s) 28273065
Submission date Jan 12, 2015
Last update date Mar 19, 2019
Contact name Robert A Beagrie
E-mail robert.beagrie@ndcls.ox.ac.uk
Organization name MRC Weatherall Institute of Molecular Medicine
Department Molecular Haematology Unit
Street address Headley Way
City Oxford
ZIP/Postal code OX39DS
Country United Kingdom
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL19736 Illumina HiSeq 2000 (other sequences)
Samples (477)
GSM1581960 F3F1_1NP
GSM1581961 F5A2_1NP
GSM1581962 F5A3_1NP
Relations
BioProject PRJNA272507
SRA SRP052060

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64881_chr10_chr10.1Mb.txt.gz 119.2 Kb (ftp)(http) TXT
GSE64881_chr10_chr10.30kb.txt.gz 47.2 Mb (ftp)(http) TXT
GSE64881_chr11_chr11.1Mb.txt.gz 105.6 Kb (ftp)(http) TXT
GSE64881_chr11_chr11.30kb.txt.gz 41.1 Mb (ftp)(http) TXT
GSE64881_chr12_chr12.1Mb.txt.gz 104.1 Kb (ftp)(http) TXT
GSE64881_chr12_chr12.30kb.txt.gz 37.3 Mb (ftp)(http) TXT
GSE64881_chr13_chr13.1Mb.txt.gz 103.3 Kb (ftp)(http) TXT
GSE64881_chr13_chr13.30kb.txt.gz 42.9 Mb (ftp)(http) TXT
GSE64881_chr14_chr14.1Mb.txt.gz 109.2 Kb (ftp)(http) TXT
GSE64881_chr14_chr14.30kb.txt.gz 40.4 Mb (ftp)(http) TXT
GSE64881_chr15_chr15.1Mb.txt.gz 73.8 Kb (ftp)(http) TXT
GSE64881_chr15_chr15.30kb.txt.gz 31.4 Mb (ftp)(http) TXT
GSE64881_chr16_chr16.1Mb.txt.gz 65.8 Kb (ftp)(http) TXT
GSE64881_chr16_chr16.30kb.txt.gz 28.0 Mb (ftp)(http) TXT
GSE64881_chr17_chr17.1Mb.txt.gz 61.9 Kb (ftp)(http) TXT
GSE64881_chr17_chr17.30kb.txt.gz 27.4 Mb (ftp)(http) TXT
GSE64881_chr18_chr18.1Mb.txt.gz 54.8 Kb (ftp)(http) TXT
GSE64881_chr18_chr18.30kb.txt.gz 24.5 Mb (ftp)(http) TXT
GSE64881_chr19_chr19.1Mb.txt.gz 23.0 Kb (ftp)(http) TXT
GSE64881_chr19_chr19.30kb.txt.gz 12.6 Mb (ftp)(http) TXT
GSE64881_chr1_chr1.1Mb.txt.gz 283.8 Kb (ftp)(http) TXT
GSE64881_chr1_chr1.30kb.txt.gz 100.5 Mb (ftp)(http) TXT
GSE64881_chr2_chr2.1Mb.txt.gz 236.4 Kb (ftp)(http) TXT
GSE64881_chr2_chr2.30kb.txt.gz 88.1 Mb (ftp)(http) TXT
GSE64881_chr3_chr3.1Mb.txt.gz 189.0 Kb (ftp)(http) TXT
GSE64881_chr3_chr3.30kb.txt.gz 64.3 Mb (ftp)(http) TXT
GSE64881_chr4_chr4.1Mb.txt.gz 178.7 Kb (ftp)(http) TXT
GSE64881_chr4_chr4.30kb.txt.gz 62.4 Mb (ftp)(http) TXT
GSE64881_chr5_chr5.1Mb.txt.gz 167.8 Kb (ftp)(http) TXT
GSE64881_chr5_chr5.30kb.txt.gz 60.0 Mb (ftp)(http) TXT
GSE64881_chr6_chr6.1Mb.txt.gz 156.5 Kb (ftp)(http) TXT
GSE64881_chr6_chr6.30kb.txt.gz 59.5 Mb (ftp)(http) TXT
GSE64881_chr7_chr7.1Mb.txt.gz 150.2 Kb (ftp)(http) TXT
GSE64881_chr7_chr7.30kb.txt.gz 50.4 Mb (ftp)(http) TXT
GSE64881_chr8_chr8.1Mb.txt.gz 118.3 Kb (ftp)(http) TXT
GSE64881_chr8_chr8.30kb.txt.gz 45.5 Mb (ftp)(http) TXT
GSE64881_chr9_chr9.1Mb.txt.gz 109.1 Kb (ftp)(http) TXT
GSE64881_chr9_chr9.30kb.txt.gz 43.4 Mb (ftp)(http) TXT
GSE64881_segmentation_at_1000000bp.passqc.multibam.txt.gz 184.2 Kb (ftp)(http) TXT
GSE64881_segmentation_at_30000bp.passqc.multibam.txt.gz 3.1 Mb (ftp)(http) TXT
Raw data are available in SRA
Processed data is available on Series record

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