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Series GSE63846 Query DataSets for GSE63846
Status Public on Dec 04, 2014
Title C.elegans treated with control or elt-2 RNAi during adulthood and exposed to E. coli or P. aeruginosa
Organism Caenorhabditis elegans
Experiment type Expression profiling by array
Summary Transcriptional profiling of adult C.elegans exposed to E.coli or to GFP-expressing P. aeruginosa (strain PA14).
For P. aeruginosa exposure, worms were separated into 2 groups - fully colonized (green) or non-colonized (dark).
Overall design Six conditions ( control or elt-2 RNAi ; E.coli, P. aeurginosa colonized, and P. aeurginosa non-colonized).
2-color arrrays, each sample co-hybridized with the same reference RNA sample from mixed stage C.elegans cultures
Worms were either sorted using the wormsorter (WS) or were hand picked (HP) under a fluorescent stereoscope
Contributor(s) Twumasi-Boateng K, Shapira M
Citation(s) 26016853
Submission date Dec 04, 2014
Last update date Jan 08, 2020
Contact name Michael Shapira
Organization name UC Berkeley
Department Integrative Biology
Lab Dr. Michael Shapira Lab
Street address 3060 Valley Life Sciences Bldg room 5163
City Berkeley
State/province CA
ZIP/Postal code 94720-3140
Country USA
Platforms (1)
GPL9458 Washington University/Genome Sequencing Center C. elegans 23K
Samples (14)
GSM1558423 controlRNAi, E.coli, hand picked, rep 1
GSM1558424 controlRNAi, E.coli, worm sorter, rep 2
GSM1558425 controlRNAi, E.coli, worm sorter, rep 3
BioProject PRJNA269251

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63846_RAW.tar 30.5 Mb (http)(custom) TAR (of GPR)
Raw data provided as supplementary file
Processed data included within Sample table

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