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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 08, 2015 |
| Title |
Genome-wide maps of SOX9 binding sites in human colorectal cancer cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Aberrant expression of SOX9 in human colorectal cancer cells suggests its roles in the development of colorectal cancer. To gain insight into SOX9-mediated transcriptional regulation in colorectal cancer cells, we attempted to identify its physiological targets on a genome-scale using chromatin immunoprecipitation (ChIP) followed by sequencing (ChIP-seq) in HT-29, human colorectal cancer cells.
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| Overall design |
SOX9 CHIP-seq was carried out using HT-29 cells.
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| Contributor(s) |
Mori-Akiyama Y, Shi Z, Chiang CI, Mistretta TA |
| Citation(s) |
26040697 |
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| Submission date |
Nov 25, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Toni-Ann Mistretta |
| E-mail(s) |
toniannm@bcm.edu
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| Organization name |
Baylor College of Medicine
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| Department |
Pathology
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| Lab |
TCH Pathology\TCMC
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| Street address |
1 Baylor Plaza, BCM 315
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| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA268497 |
| SRA |
SRP050256 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE63629_RAW.tar |
411.3 Mb |
(http)(custom) |
TAR (of BAR, BED, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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