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Series GSE62370 Query DataSets for GSE62370
Status Public on Feb 01, 2015
Title miRNA expression profiling of primary melanoma tumors (cohort I)
Platform organism synthetic construct
Sample organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary We performed global microRNA expression profiling of a cohort of primary melanoma patient samples linked to a well-annotated clinical database. The goal of this study was to identify microRNA that are associated to or correlated with various clinical parameters and patient outcomes. Candidate microRNA were identified for building prognostic models and functional testing.
 
Overall design 92 primary melanoma (well-annotated with long clinical follow-up) and 9 congenital nevi samples were analyzed to Exiqon miRCURY two color arrays. The reference sample used was an equal combination of all samples analyzed. By this design, ratio data of test sample/reference is mean-centered data.
 
Contributor(s) Hernando E, Hanniford DS, Zhong J, Osman I
Citation(s) 25677173, 26089374
Submission date Oct 15, 2014
Last update date Dec 16, 2015
Contact name Eva Hernando-Monge
E-mail(s) Eva.Hernando-Monge@nyumc.org
Phone 212-263-9054
Organization name NYU Langone Medical Center
Street address 550 1st Ave. Smilow 305
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL19295 Exiqon miRCURY LNA array version 11.0 miRBASE version 14.0
Samples (101)
GSM1525919 Congenital Nevi_001
GSM1525920 Congenital Nevi_002
GSM1525921 Congenital Nevi_003
This SubSeries is part of SuperSeries:
GSE62372 miRNA expression profiling of primary melanoma tumors
Relations
BioProject PRJNA263930

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62370_RAW.tar 169.8 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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