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Series GSE62274 Query DataSets for GSE62274
Status Public on Oct 10, 2017
Title YAP drives proliferation and tumorigenesis by recruiting Mediator to super- enhancer elements (H69)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The Hippo/YAP signaling pathway is a crucial regulator of tissue growth and stem cell activity. YAP is also a powerful driver of tumor growth and its nuclear accumulation is frequently observed in human cancer.
However, the molecular mechanism employed by YAP to orchestrate transcriptional outputs are undefined. Here, we utilize genomic technologies to demonstrate that YAP occupancy is restricted to a small number of distal regulatory elements highly enriched for superenhancers.
Target genes associated with these elements are selectively sensitive to the loss of YAP in cancer cells. YAP directs recruitment of the Mediator complex to activate transcriptional regulation from these enhancers without affecting chromatin organization
We also provide in vivo genetic evidence that loss of Mediator rescues YAP-driven cancer cell proliferation and organ overgrowth. Our data provide a molecular mechanism behind YAP-driven tumorigenesis, and highlights transcriptional control as a potential therapeutic strategy for YAP-driven cancers.
 
Overall design A total of four ChIP-Seq samples are available. Two directed against YAP using two different antibodies (Santa Cruz and Avruch), one directed against TEAD1, an unrelated IgG for background noise definition
 
Contributor(s) Galli GG, Carrara M, Valdes-Quezada C, Gurung B, Pepe-Mooney B, Geeven G, Yuan W, de Laat W, Calogero RA, Camargo FD
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 10, 2014
Last update date May 15, 2019
Contact name Raffaele A Calogero
E-mail(s) raffaele.calogero@unito.it
Phone ++39 0116706454
Organization name University of Torino
Department Molecular Biotechnology Center
Lab Bioinformatics and Genomics Unit
Street address Via Nizza 52
City Torino
State/province To
ZIP/Postal code 10126
Country Italy
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (4)
GSM1524336 H69 IgG
GSM1524337 H69 YAP Santa Cruz
GSM1524338 H69 YAP
Relations
BioProject PRJNA263635
SRA SRP048841

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62274_RAW.tar 850.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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