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Series GSE61696 Query DataSets for GSE61696
Status Public on Jun 18, 2015
Title Type II JAK2 Inhibitor NVP-CHZ868 is Active in Vitro and in Vivo Against JAK2-Dependent B-cell Acute Lymphoblastic Leukemias
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Gene expression profiling was performed to define transcriptional programs associated with response to type II JAK2 inhibitor NVP-CHZ868 alone or in combination with dexamethasone in vitro and in vivo.
 
Overall design MHH-CALL4 cells harboring a CRLF2 rearrangement and JAK2 I682F mutation were treated with vehicle, CHZ868, dexamethasone, or CHZ868 + dexamethasone combination for 12 hours in triplicate. RNA was then extracted for hybridization on Affymetrix microarrays.
CRLF2+ patient-derived xenografts (05-412, 05-440, and 05-537) were treated in vivo for 3 days with vehicle, CHZ868, dexamethasone, or CHZ868 + dexmathasone combination for 3 days and then sacrificed. Transcriptional profiling was performed on unselected splenocytes from these animals.
 
Contributor(s) Li LS, Chapuy B, Weinstock DM
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Submission date Sep 24, 2014
Last update date Jun 18, 2015
Contact name Loretta Li
E-mail(s) loretta_li@dfci.harvard.edu
Organization name Dana-Farber Cancer Institute
Department Medical Oncology
Lab Weinstock Lab
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL19198 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 (CDF: hta20hsensgcdf_18.0.0.cdf, version 18)
Samples (24)
GSM1511396 MHH-CALL4_CHZ treatment - replicate 1
GSM1511397 MHH-CALL4_CHZ treatment - replicate 2
GSM1511398 MHH-CALL4_CHZ treatment - replicate 3
Relations
BioProject PRJNA261873

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61696_M4only_HUGO.txt.gz 1.6 Mb (ftp)(http) TXT
GSE61696_RAW.tar 756.0 Mb (http)(custom) TAR (of CEL)
GSE61696_primaries_HUGO.txt.gz 1.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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