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Series GSE61328 Query DataSets for GSE61328
Status Public on Dec 22, 2015
Title Next generation sequencing of miRNAs in folic acid-induced kidney damage
Organism Mus musculus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We have used small RNA sequencing to measure the expression of all miRNAs present in the kidneys during the development of folic acid-induced kidney injury and fibrosis. From this miRNA expression profile, we identified miRNAs associated with different stages and aspects of kidney damage.
Overall design BALB/c mice were injected with 250mg/kg of folic acid and kidneys were collected at 0, 1, 2, 3, 7, 14, and 28 days. Total RNA was prepared for sequencing using the Illumina TruSeq Small RNA Sample Preparation Kit, and analyzed on an Illumina HiSeq 2000.
Contributor(s) Pellegrini KL, Vaidya VS
Citation(s) 26707937
Submission date Sep 11, 2014
Last update date May 15, 2019
Contact name Kathryn Pellegrini
Organization name Brigham and Women's Hospital, Harvard Medical School
Department Renal Division, Department of Medicine
Street address 77 Avenue Louis Pasteur
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (21)
GSM1502449 FA_Day0_rep1
GSM1502450 FA_Day0_rep2
GSM1502451 FA_Day0_rep3
BioProject PRJNA260787
SRA SRP047031

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61328_FA_full_count.txt.gz 35.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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