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Series GSE6085 Query DataSets for GSE6085
Status Public on Jan 11, 2008
Title Expression data from Murine T cell in response to IL-2 at 10 time points in 24 hours after IL-2 treatment
Organism Mus musculus
Experiment type Expression profiling by array
Summary The cytokine IL-2 determines T cell fate by controlling T cell proliferation and differentiation, but the expression files of IL-2 regulated genes are not defined
Using Affymetrix mouse genome array and mouse T cell line CTLL-2, we analyzed the expression profiles of IL-2 regulated genes over 10 time points in 24 hours after IL-2 treatment. A total of 2,813 genes were differentially expressed (?2-fold change) at least at one time point in response to IL-2 stimulation. Clustering analyses showed that these genes consist of 9 clusters, suggesting that the IL-2 regulated genes in mouse T cells have 9 expression patterns. These genes involve in many biological processes, including immune response, signal transduction, apoptosis, cell cycle, transcription, transport, biosynthesis and various metabolisms.

Two supplementary tables are linked to this series:

Table 1: IL-2 responsive genes over the first 24 hours post-stimulation
Table 2: Newly identified IL-2 regulated genes function in a variety of biological processes
Keywords: stress response
 
Overall design Murine cytotoxic T lymphocyte cell line CTLL-2, derived from a C57BL/6 mouse, is an IL-2 dependent cell line. Cells were cultured in D10 medium in an incubator with 5% CO2 at 37oC to mid-log phase (~2 X 105 cells/mL), and collected by centrifugation, washed with phosphate buffered saline (PBS) (Invitrogen), resuspended at 1 X 106 cells/mL in the medium without IL-2 (IL-2 starvation) and cultured for 14 hours (No IL-2 stimulation, T0, 5 reps). After adding human rIL-2 (100 U/mL, Chiron, IL-2 stimulation), cells were collected at time point 0.5, 1, 2, 4, 6, 8, 10, 12, 16 and 24 hours, at least 3 biological replicates were carried out for each time point.Total RNA were extracted from the cells and was hybridized on Affymetrix GeneChip Mouse Genome 430 2.0 Array.
 
Contributor(s) Zhang Z, Martino A, Faulon J
Citation(s) 18184039, 21722407
Submission date Oct 19, 2006
Last update date Feb 11, 2019
Contact name Zhaoduo Zhang
E-mail zzhang@sandia.gov
Phone 925-294-2513
Fax 925-294-3282
Organization name Sandia National Labs
Department Biosystems
Street address 7011 East Ave
City Livermore
State/province CA
ZIP/Postal code 94551
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (43)
GSM108334 T cell_IL-2_0hour_rep1
GSM108335 T cell_IL-2_0hour_rep2
GSM108336 T cell_IL-2_0hour_rep3
Relations
BioProject PRJNA97557

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE6085_RAW.tar 154.8 Mb (http)(custom) TAR (of CEL, EXP)
GSE6085_Table_1.xls 510.0 Kb (ftp)(http) XLS
GSE6085_Table_2.xls 1.6 Mb (ftp)(http) XLS
Raw data provided as supplementary file
Processed data included within Sample table

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