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Series GSE60267 Query DataSets for GSE60267
Status Public on Jun 01, 2015
Title Che-1 modulates the decision between cell cycle arrest and apoptosis by its binding to p53.
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The tumor suppressor p53 is mainly involved in the transcriptional regulation of a large number of growth-arrest- and apoptosis-related genes. However, a clear understanding of which factor/s influences the choice between these two opposing p53- dependent outcomes remains largely elusive. We have previously described that in response to DNA damage, the RNA polymerase II binding protein Che-1/AATF transcriptionally activates p53. Here, we show that Che-1 binds directly p53. This interaction essentially occurs in the first hours of DNA damage, whereas it is lost when cells undergo to apoptosis in response to post-transcriptional modifications. Moreover, Che-1 sits in a ternary complex with p53 and the oncosuppressor Brca1. Accordingly, our analysis of genome-wide chromatin occupancy by p53 revealed that p53/Che1 interaction results in preferential transactivation of growth-arrest p53 target genes over its pro-apoptotic target genes. Notably, exposure of Che-1+/- mice to ionizing radiations resulted in enhanced apoptosis of thymocytes, compared to wild-type mice. These results confirm Che-1 as an important regulator of p53 activity and suggest Che-1 to be a promising yet attractive drug target for cancer therapy.
 
Overall design ChIP-Seq for p53 in control (DNA damage, IR) and Che-1 depleted Hct116 cells
 
Contributor(s) Desantis A, Bruno T, Catena V, De Nicola F, Goeman F, Pallocca M, D' Onorio De Meo P, Fanciulli M
Citation(s) 25996291
Submission date Aug 08, 2014
Last update date May 15, 2019
Contact name Matteo Pallocca
Organization name Italian National Cancer Institute "Regina Elena"
Street address Via Fermo Ognibene
City Rome
ZIP/Postal code 00144
Country Italy
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (3)
GSM1468849 IR P53
GSM1468850 iChe_P53
GSM1468851 Input DNA (p53)
Relations
BioProject PRJNA257888
SRA SRP045381

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60267_RAW.tar 393.8 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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