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Series GSE60232 Query DataSets for GSE60232
Status Public on Feb 26, 2015
Title CTCF functions as a chromatin insulator in the HoxA cluster during neurogenesis [ChIP-Seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In this experiment, we sought to identify how the distribution of CTCF, H3K27me3, H3K4me3, Pol II, H2AK119Ub1, EZH2
 
Overall design 3 lines (WT, Δ5|6, Δ5|6:7|9)
 
Contributor(s) Narendra V, An D, Mazzoni E, Reinberg D
Citation(s) 25722416
Submission date Aug 08, 2014
Last update date May 15, 2019
Contact name Danny Reinberg
E-mail(s) reinbd01@nyumc.org
Phone 212-263-9036
Organization name NYU School of Medicine / HHMI
Street address 522 First Avenue, 2nd floor Rm 211
City New York City
State/province New York
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (17)
GSM1468392 CTCF.ESC.WT [ChIP-Seq]
GSM1468393 CTCF.ESC.Δ5|6 [ChIP-Seq]
GSM1468394 CTCF.MN.WT [ChIP-Seq]
This SubSeries is part of SuperSeries:
GSE60240 CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
Relations
BioProject PRJNA257806
SRA SRP045367

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60232_RAW.tar 3.8 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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