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Series GSE60112 Query DataSets for GSE60112
Status Public on Aug 06, 2014
Title Time-series DNA occupancy during the yeast respiratory cycle
Organism Saccharomyces cerevisiae
Experiment type Genome variation profiling by genome tiling array
Summary We use metabolically synchronous, continuously-grown yeast cultures to measure DNA occupancy and track the global patterns with respect to the metabolic state of the culture, showing a genome-wide nucleosome focusing in the reductive phase, followed by clearance of the promoter regions
 
Overall design 32 timepoints protein-bound (pDNA) vs. genomic (gDNA) over 3 respiratory cycles + 3 MNase-digested naked DNA control samples.
 
Contributor(s) Amariei C, Murray DB
Citation(s) 28357254
Cornelia Amariei, Rainer Machné, Viktor Stolc, Tomoyoshi Soga, Masaru Tomita and Douglas B. Murray. Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program. Microbial Cell, 2014, Vol. 1, No. 9, pp. 279 - 288
Submission date Aug 05, 2014
Last update date Jul 10, 2019
Contact name Douglas Brian Murray
E-mail(s) dougie@ttck.keio.ac.jp
Organization name Institute for Advanced Biosciences
Street address Nipponkoku 403-1, Daihouji
City Tsuruoka
State/province Yamagata
ZIP/Postal code 997-0016
Country Japan
 
Platforms (1)
GPL19046 Yeast_WG
Samples (35)
GSM1465082 DNA_occupancy_TP1
GSM1465083 DNA_occupancy_TP2
GSM1465084 DNA_occupancy_TP3
Relations
BioProject PRJNA257509

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60112_Processed_data.txt.gz 109.3 Mb (ftp)(http) TXT
GSE60112_RAW.tar 596.8 Mb (http)(custom) TAR (of PAIR)
Raw data provided as supplementary file
Processed data are available on Series record

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