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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 14, 2015 |
| Title |
Transcription factor binding in liver tissue isolated from WT and GRdim mice |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We report ChIP-seq and ChIP-exo data for GR in liver tissue isolated from WT and GRdim mice. Comparison of the mouse models reveals that GR interacts with the genome as both a monomer and dimer.
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| Overall design |
Examination of GR, RNAPII and CEBPb binding in WT and GRdim mice on a genome-wide scale
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| Contributor(s) |
Lim H, Steger D |
| Citation(s) |
25957148 |
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| Submission date |
Jul 24, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Hee-Woong Lim |
| Organization name |
Cincinnati Children's Hospital Medical Center
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| Department |
Division of Biomedical Informatics
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| Street address |
3333 Burnet Ave. MLC 7024
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| City |
Cincinnati |
| State/province |
Ohio |
| ZIP/Postal code |
45229 |
| Country |
USA |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (29)
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| GSM1446065 |
ChIP-seq, Liver_GR_WT_6am |
| GSM1446066 |
ChIP-seq, Liver_GR_WT_6pm |
| GSM1446067 |
ChIP-seq, Liver_GR_WT_pred_6am |
| GSM1446068 |
ChIP-seq, Liver_RNAPII_WT_6am |
| GSM1446069 |
ChIP-seq, Liver_RNAPII_WT_pred_6am |
| GSM1446070 |
ChIP-seq, Liver_CEBPb_WT_6pm |
| GSM1446071 |
ChIP-exo, Liver_GR_GRdim_6am |
| GSM1446072 |
ChIP-exo, Liver_GR_GRdim_6pm |
| GSM1446073 |
ChIP-exo, Liver_GR_GRdim_pred_6am |
| GSM1446074 |
ChIP-exo, Liver_GR_WT_6am |
| GSM1446075 |
ChIP-exo, Liver_GR_WT_6pm |
| GSM1446076 |
ChIP-exo, Liver_GR_WT_pred_6am |
| GSM1631168 |
ChIP-seq, Liver_CEBPb_WT_6am |
| GSM1631170 |
ChIP-seq, Liver_CEBPb_WT_pred_6am |
| GSM1631172 |
ChIP-seq, Liver_Input_GRdim_6am, replicate 1 |
| GSM1631173 |
ChIP-seq, Liver_Input_GRdim_6am, replicate 2 |
| GSM1631174 |
ChIP-seq, Liver_Input_GRdim_6pm, replicate 1 |
| GSM1631175 |
ChIP-seq, Liver_Input_GRdim_6pm, replicate 2 |
| GSM1631176 |
ChIP-seq, Liver_Input_GRdim_pred_6am, replicate 1 |
| GSM1631177 |
ChIP-seq, Liver_Input_GRdim_pred_6am, replicate 2 |
| GSM1631178 |
ChIP-seq, Liver_Input_WT_6am, replicate 1 |
| GSM1631179 |
ChIP-seq, Liver_Input_WT_6am, replicate 2 |
| GSM1631180 |
ChIP-seq, Liver_Input_WT_6pm, replicate 1 |
| GSM1631181 |
ChIP-seq, Liver_Input_WT_6pm, replicate 2 |
| GSM1631182 |
ChIP-seq, Liver_Input_WT_pred_6am, replicate 1 |
| GSM1631183 |
ChIP-seq, Liver_Input_WT_pred_6am, replicate 2 |
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| Relations |
| BioProject |
PRJNA256167 |
| SRA |
SRP044839 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE59752_RAW.tar |
6.7 Mb |
(http)(custom) |
TAR (of BED, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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