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Series GSE59334 Query DataSets for GSE59334
Status Public on Oct 06, 2014
Title microRNA expression profiling and its integration with mRNA in metastatic melanoma reveal associations with BRAF mutation status and patient prognosis
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Objectives/experimental design
 
Overall design Samples eligible for this study (n=84) were obtained from lymph node specimens (Melanoma Institute Australia (MIA) Biospecimen Bank) in which macroscopic tumor was observed, obtained from patients believed to be without distant metastases at the time of tumor banking based on clinical examination and computerised axial tomographic scanning of the brain, chest, abdomen and pelvis. Specimens were macro-dissected at time of banking and subsequently reviewed to meet minimum criteria for tumor cell content (>80%) and amount of necrosis (<30%). Linked clinical and pathologic data were obtained from the MIA research database. mRNA expression profiling information in the same samples is available: GSE54467.
 
Contributor(s) Tembe V, Schramm S, Stark MS, Patrick E, Jayaswal V, Tang YH, Barbour A, Hayward NK, Thompson JF, Scolyer RA, Yang YH, Mann GJ
Citation(s) 24975271
Submission date Jul 11, 2014
Last update date Oct 29, 2018
Contact name Graham J. Mann
E-mail(s) graham.mann@sydney.edu.au
Organization name Melanoma Institute Australia
Street address Poche Centre, 40 Rocklands Road
City North Sydney
State/province NSW
ZIP/Postal code 2060
Country Australia
 
Platforms (1)
GPL15018 Agilent-031181 Unrestricted_Human_miRNA_V16.0_Microarray 030840 (Feature Number version)
Samples (74)
GSM1435150 melanoma_AJCCstageIII_TumourID5
GSM1435151 melanoma_AJCCstageIII_TumourID6
GSM1435152 melanoma_AJCCstageIII_TumourID13
Relations
BioProject PRJNA255097

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE59334_RAW.tar 224.0 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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