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Series GSE58683 Query DataSets for GSE58683
Status Public on Apr 29, 2016
Title Zebrafish 50% epiboly embryos: controls vs. Aplnra/b morphants
Organism Danio rerio
Experiment type Expression profiling by array
Summary Transcriptional profiling of 50% epiboly zebrafish embryos comparing wildtype (control) to Aplnra/b morpholino injected embryos.
Goal was to determine any gene expression changes in embryos deficient for the Apelin receptor.
Publication summary: The Apelin receptor (Aplnr) has been shown to be essential for proper cardiac progenitor migration during gastrulation. Loss of the Aplnr results in a delay in the ingression of lateral marginal cells and the complete absence of the heart and early cardiac gene expression. How the Aplnr is required at a molecular level for cardiac progenitor migration remains completely unknown. We present evidence to suggest that the Aplnr enhances Nodal signaling to initiate the migration program at the correct time in development. Apelin receptor loss of function embryos exhibit a reduction in a wide range of Nodal target genes while activation of the receptor is capable of boosting their expression. Furthermore, Aplnr deficient embryos are exquisitely sensitive to Nodal receptor inhibitors. In order to directly interrogate the functional consequence of reduced Nodal signaling in the Aplnr cardiac phenotype, we raised the level of Nodal activity in aplnr mutants and found that this was able to provide a near complete rescue. We next sought to determine a mechanism by which lower Nodal signaling levels could translate into a delay in migration. Remarkably, we observe a delay in the expression of mesp family members in Aplnr loss of function embryos at the beginning of gastrulation. The mesp family has previously been implicated in mesodermal migration and we show that they are downstream targets of Nodal. We propose that in the absence of the Aplnr the appropriate Nodal threshold required to initiate the downstream cardiac progenitor “specification/migration” program requires a longer length of time to be attained. This translates into a delay in migration and consequently cardiac progenitors are not capable of reaching their final destination. In this study we demonstrate how the fine tuning of a key signaling pathway is critical for the proper development of the early embryo.
 
Overall design Two-condition experiment, control vs. morphant: 4 Biological replicates
 
Contributor(s) Deshwar AR, Scott IC
Citation(s) 27077952
Submission date Jun 19, 2014
Last update date May 01, 2016
Contact name Ian Cameron Scott
E-mail(s) ian.scott@sickkids.ca
Organization name The Hospital for Sick Childen
Department Developmental and Stem Cell Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G0A4
Country Canada
 
Platforms (1)
GPL14664 Agilent-026437 D. rerio (Zebrafish) Oligo Microarray V3 (Probe Name version)
Samples (4)
GSM1416904 control vs. morphant replicate 1
GSM1416905 control vs. morphant replicate 2
GSM1416906 control vs. morphant replicate 3
Relations
BioProject PRJNA253177

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58683_RAW.tar 62.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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