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Series GSE58641 Query DataSets for GSE58641
Status Public on Jun 18, 2014
Title Genome-wide map of long non-coding RNA steroid receptor RNA activator (SRA) and its associated RNA heliase p68 in human pluripotent stem cells NTERA2
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed Chromatin Isolation by RNA Purification (ChIRP) of SRA and ChIP of p68 following by high-throughput sequencing in NTERA2 cell line. We find that SRA localizes with p68 genome-wide at genes whose function is involved in embryonic development.
 
Overall design SRA ChIRP and p68 ChIP of triplicate samples.
 
Contributor(s) Felsenfeld G, Wongtrakoongate P, Riddick G
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Submission date Jun 18, 2014
Last update date May 15, 2019
Contact name Gary Felsenfeld
E-mail(s) garyf@intra.niddk.nih.gov
Organization name NIDDK, NIH
Lab LMB
Street address 9000 Rockville Pike
City BETHESDA
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (3)
GSM1415922 SRA ChIRP-seq
GSM1415923 p68 ChIP-seq
GSM1415924 Input
Relations
BioProject PRJNA253062
SRA SRP043389

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58641_RAW.tar 200.0 Kb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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