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Series GSE58641 Query DataSets for GSE58641
Status Public on Jun 18, 2014
Title Genome-wide map of long non-coding RNA steroid receptor RNA activator (SRA) and its associated RNA heliase p68 in human pluripotent stem cells NTERA2
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed Chromatin Isolation by RNA Purification (ChIRP) of SRA and ChIP of p68 following by high-throughput sequencing in NTERA2 cell line. We find that SRA localizes with p68 genome-wide at genes whose function is involved in embryonic development.
Overall design SRA ChIRP and p68 ChIP of triplicate samples.
Contributor(s) Felsenfeld G, Wongtrakoongate P, Riddick G
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Submission date Jun 18, 2014
Last update date May 15, 2019
Contact name Gary Felsenfeld
Organization name NIDDK, NIH
Street address 9000 Rockville Pike
State/province MD
ZIP/Postal code 20892
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (3)
GSM1415922 SRA ChIRP-seq
GSM1415923 p68 ChIP-seq
GSM1415924 Input
BioProject PRJNA253062
SRA SRP043389

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Supplementary file Size Download File type/resource
GSE58641_RAW.tar 200.0 Kb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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