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Series GSE58447 Query DataSets for GSE58447
Status Public on Jan 01, 2015
Title Transcriptome analysis of threespine sticklebacks acclimated in different salinities
Organism Gasterosteus aculeatus
Experiment type Expression profiling by high throughput sequencing
Summary RNA sequencing was used to measure global gene expression in wild caught threespine sticklebacks. Native freshwater and marine fish were acclimated in water of different salinities before the gene expression in kidney was measured. The comparative transcriptomic analysis allowed the identification of salt-responsive genes.
 
Overall design We acclimated native freshwater (FW) and saltwater (SW) threespine sticklebacks to fresh (salinity: 0 g/L), brackish (salinity: 11 g/L), and sea water (salinity: 33 g/L) for 30 days, and then measured the global gene expression in fish kidneys.
Web link http://stickleback.genomezoo.net/
 
Contributor(s) Cai JJ
Citation(s) 25309574
Submission date Jun 13, 2014
Last update date Nov 24, 2015
Contact name James J Cai
Organization name Texas A&M University
Department Veterinary Integrative Biosciences
Lab Cai's Lab
Street address TAMUS 4458
City College Station
State/province TX
ZIP/Postal code 77843-4458
Country USA
 
Platforms (1)
GPL18463 Illumina HiSeq 2000 (Gasterosteus aculeatus)
Samples (12)
GSM1411484 FW00K_rep1
GSM1411485 FW00K_rep2
GSM1411486 FW00K_rep3
Relations
BioProject PRJNA252659
SRA SRP043184

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58447_threespine_stickleback_kidney_gene_exp_fpkm.txt.gz 1.0 Mb (ftp)(http) TXT
Processed data is available on Series record
Raw data are available in SRA

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