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Series GSE58135 Query DataSets for GSE58135
Status Public on Jun 11, 2014
Title Breast Cancer RNA-seq
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq was performed on breast cancer cell lines and primary tumors
Overall design RNA-seq was performed on 28 breast cancer cell lines, 42 Triple Negative Breast Cancer (TNBC) primary tumors, and 42 Estrogen Receptor Positive (ER+) and HER2 Negative Breast Cancer primary tumors, 30 uninovlved breast tissue samples that were adjacent to ER+ primary tumors, 5 breast tissue samples from reduction mammoplasty procedures performed on patients with no known cancer, and 21 uninvolved breast tissue samples that were adjacent to TNBC primary tumors.
Contributor(s) Varley KE, Myers RM
Citation(s) 24929677
Submission date Jun 01, 2014
Last update date May 15, 2019
Contact name Katherine E Varley
Organization name Huntsman Cancer Institute University of Utah
Department Department of Oncological Sciences
Lab Varley Lab
Street address 2000 Circle of Hope, Room 3719
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (168)
GSM1401648 ZR-75-1
GSM1401649 BT-474
GSM1401650 MDA-MB-468
BioProject PRJNA251383
SRA SRP042620

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58135_RAW.tar 258.1 Mb (http)(custom) TAR (of BEDPE, FPKM_TRACKING)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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