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Series GSE57906 Query DataSets for GSE57906
Status Public on May 23, 2014
Title Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage
Organism Glycine max
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We performed small-RNA profiling of soybean seed regions and sub-regions, to gain new insights into the regulatory processes required for seed differentiation.
 
Overall design Seventeen subregions of the Early Maturation stage of the soybean seeds were analyzed. Two biological replicates were collected for each subregions.
 
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date May 22, 2014
Last update date Dec 07, 2016
Contact name John Harada
E-mail jjharada@ucdavis.edu
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (34)
GSM1397256 Soybean Early Maturation Stage Axis Epidermis-Biological replicate 1
GSM1397257 Soybean Early Maturation Stage Axis Epidermis-Biological replicate 2
GSM1397258 Soybean Early Maturation Stage Axis Plumule-Biological replicate 1
Relations
BioProject PRJNA248403
SRA SRP042201

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57906_RAW.tar 288.0 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file

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