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Series GSE57883 Query DataSets for GSE57883
Status Public on May 22, 2014
Title Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage
Organism Glycine max
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We performed small-RNA profiling of soybean seed regions and sub-regions, to gain new insights into the regulatory processes required for seed differentiation.
 
Overall design Eight subregions of the Cotyledon stage of the soybean seeds were analyzed. Two biological replicates were collected for each subregions.
 
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
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Submission date May 21, 2014
Last update date Dec 07, 2016
Contact name John Harada
E-mail jjharada@ucdavis.edu
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (16)
GSM1396335 Soybean Cotyledon Stage Embryo Proper-biological replicate 1
GSM1396336 Soybean Cotyledon Stage Embryo Proper-biological replicate 2
GSM1396337 Soybean Cotyledon Stage Embryo Proper Axis-biological replicate 1
Relations
BioProject PRJNA248316
SRA SRP042171

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57883_RAW.tar 158.7 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file

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