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Status |
Public on May 22, 2014 |
Title |
Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage |
Organism |
Glycine max |
Experiment type |
Non-coding RNA profiling by high throughput sequencing
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Summary |
We performed small-RNA profiling of soybean seed regions and sub-regions, to gain new insights into the regulatory processes required for seed differentiation.
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Overall design |
Eight subregions of the Cotyledon stage of the soybean seeds were analyzed. Two biological replicates were collected for each subregions.
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Contributor(s) |
Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U |
Citation missing |
Has this study been published? Please login to update or notify GEO. |
Submission date |
May 21, 2014 |
Last update date |
May 15, 2019 |
Contact name |
John Harada |
E-mail(s) |
jjharada@ucdavis.edu
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Organization name |
University of California
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Department |
Plant Biology
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Lab |
Harada lab
|
Street address |
One Shields Avenue
|
City |
Davis |
State/province |
CA |
ZIP/Postal code |
95616 |
Country |
USA |
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Platforms (1) |
GPL15008 |
Illumina HiSeq 2000 (Glycine max) |
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Samples (16)
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GSM1396335 |
Soybean Cotyledon Stage Embryo Proper-biological replicate 1 |
GSM1396336 |
Soybean Cotyledon Stage Embryo Proper-biological replicate 2 |
GSM1396337 |
Soybean Cotyledon Stage Embryo Proper Axis-biological replicate 1 |
GSM1396338 |
Soybean Cotyledon Stage Embryo Proper Axis-biological replicate 2 |
GSM1396339 |
Soybean Cotyledon Stage Embryo Proper Cotyledon-biological replicate 1 |
GSM1396340 |
Soybean Cotyledon Stage Embryo Proper Cotyledon-biological replicate 2 |
GSM1396341 |
Soybean Cotyledon Stage Endosperm-biological replicate 1 |
GSM1396342 |
Soybean Cotyledon Stage Endosperm-biological replicate 2 |
GSM1396343 |
Soybean Cotyledon Stage Seed Coat Epidermis-biological replicate 1 |
GSM1396344 |
Soybean Cotyledon Stage Seed Coat Epidermis-biological replicate 2 |
GSM1396345 |
Soybean Cotyledon Stage Seed Coat Hilum-biological replicate 1 |
GSM1396346 |
Soybean Cotyledon Stage Seed Coat Hilum-biological replicate 2 |
GSM1396347 |
Soybean Cotyledon Stage Seed Coat Inner Integument-biological replicate 1 |
GSM1396348 |
Soybean Cotyledon Stage Seed Coat Inner Integument-biological replicate 2 |
GSM1396349 |
Soybean Cotyledon Stage Seed Coat Outer Integument-biological replicate 1 |
GSM1396350 |
Soybean Cotyledon Stage Seed Coat Outer Integument-biological replicate 2 |
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Relations |
BioProject |
PRJNA248316 |
SRA |
SRP042171 |