|
| Status |
Public on May 22, 2014 |
| Title |
Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage |
| Organism |
Glycine max |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We performed small-RNA profiling of soybean seed regions and sub-regions, to gain new insights into the regulatory processes required for seed differentiation.
|
| |
|
| Overall design |
Eight subregions of the Cotyledon stage of the soybean seeds were analyzed. Two biological replicates were collected for each subregions.
|
| |
|
| Contributor(s) |
Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 21, 2014 |
| Last update date |
Dec 07, 2016 |
| Contact name |
John Harada |
| E-mail |
jjharada@ucdavis.edu
|
| Organization name |
University of California
|
| Department |
Plant Biology
|
| Lab |
Harada lab
|
| Street address |
One Shields Avenue
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL15008 |
Illumina HiSeq 2000 (Glycine max) |
|
| Samples (16)
|
| GSM1396335 |
Soybean Cotyledon Stage Embryo Proper-biological replicate 1 |
| GSM1396336 |
Soybean Cotyledon Stage Embryo Proper-biological replicate 2 |
| GSM1396337 |
Soybean Cotyledon Stage Embryo Proper Axis-biological replicate 1 |
| GSM1396338 |
Soybean Cotyledon Stage Embryo Proper Axis-biological replicate 2 |
| GSM1396339 |
Soybean Cotyledon Stage Embryo Proper Cotyledon-biological replicate 1 |
| GSM1396340 |
Soybean Cotyledon Stage Embryo Proper Cotyledon-biological replicate 2 |
| GSM1396341 |
Soybean Cotyledon Stage Endosperm-biological replicate 1 |
| GSM1396342 |
Soybean Cotyledon Stage Endosperm-biological replicate 2 |
| GSM1396343 |
Soybean Cotyledon Stage Seed Coat Epidermis-biological replicate 1 |
| GSM1396344 |
Soybean Cotyledon Stage Seed Coat Epidermis-biological replicate 2 |
| GSM1396345 |
Soybean Cotyledon Stage Seed Coat Hilum-biological replicate 1 |
| GSM1396346 |
Soybean Cotyledon Stage Seed Coat Hilum-biological replicate 2 |
| GSM1396347 |
Soybean Cotyledon Stage Seed Coat Inner Integument-biological replicate 1 |
| GSM1396348 |
Soybean Cotyledon Stage Seed Coat Inner Integument-biological replicate 2 |
| GSM1396349 |
Soybean Cotyledon Stage Seed Coat Outer Integument-biological replicate 1 |
| GSM1396350 |
Soybean Cotyledon Stage Seed Coat Outer Integument-biological replicate 2 |
|
| Relations |
| BioProject |
PRJNA248316 |
| SRA |
SRP042171 |
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