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Series GSE57606 Query DataSets for GSE57606
Status Public on May 14, 2014
Title Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage
Organism Glycine max
Experiment type Expression profiling by high throughput sequencing
Summary We investigated soybean seed development because (1) soybean seeds are a major source of food and fuel, (2) soybean seeds have been an excellent system for studying the basic processes controlling seed development for over three decades, and (3) new soybean genomic resources, including the sequence of the soybean genome and the gene expression profiles for all seed compartments, tissues, and cell types, can be used to gain new insights into the regulatory processes required for seed differentiation. We sequenced messenger RNA populations of specific soybean seed compartments, which will provide new insights into gene expression that are important for “making a soybean seed.”
 
Overall design Ten compartments of the Cotyledon stage of the soybean seeds were analyzed. Three biological replicates were collected for each compartment.
 
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
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Submission date May 13, 2014
Last update date Jun 20, 2018
Contact name John Harada
E-mail jjharada@ucdavis.edu
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (30)
GSM1385450 Soybean Cotyledon Stage Embryo Proper-Biological replicate 1
GSM1385451 Soybean Cotyledon Stage Embryo Proper-Biological replicate 2
GSM1385452 Soybean Cotyledon Stage Embryo Proper-Biological replicate 3
This SubSeries is part of SuperSeries:
GSE116036 mRNA profiling of soybean seed regions and tissues at five developmental stages
Relations
BioProject PRJNA246783
SRA SRP041932

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57606_RAW.tar 7.8 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file

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