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Series GSE57350 Query DataSets for GSE57350
Status Public on May 07, 2014
Title Gene Expression Changes in the Development of the Soybean Seed-Heart Stage
Organism Glycine max
Experiment type Expression profiling by high throughput sequencing
Summary We investigated soybean seed development because (1) soybean seeds are a major source of food and fuel, (2) soybean seeds have been an excellent system for studying the basic processes controlling seed development for over three decades, and (3) new soybean genomic resources, including the sequence of the soybean genome and the gene expression profiles for all seed compartments, tissues, and cell types, can be used to gain new insights into the regulatory processes required for seed differentiation. We sequenced messenger RNA populations of specific soybean seed compartments, which will provide new insights into gene expression that are important for “making a soybean seed.”
Overall design Eight compartments of the heart stage of the soybean seeds were analyzed. Three biological replicates were collected for each compartment.
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
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Submission date May 06, 2014
Last update date May 15, 2019
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (24)
GSM1380799 Soybean Heart Stage Embryo Proper-Biological replicate 1
GSM1380800 Soybean Heart Stage Embryo Proper-Biological replicate 2
GSM1380801 Soybean Heart Stage Embryo Proper-Biological replicate 3
This SubSeries is part of SuperSeries:
GSE116036 mRNA profiling of soybean seed regions and tissues at five developmental stages
BioProject PRJNA246314
SRA SRP041710

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57350_RAW.tar 6.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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