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| Status |
Public on May 07, 2014 |
| Title |
Gene Expression Changes in the Development of the Soybean Seed-Heart Stage |
| Organism |
Glycine max |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We investigated soybean seed development because (1) soybean seeds are a major source of food and fuel, (2) soybean seeds have been an excellent system for studying the basic processes controlling seed development for over three decades, and (3) new soybean genomic resources, including the sequence of the soybean genome and the gene expression profiles for all seed compartments, tissues, and cell types, can be used to gain new insights into the regulatory processes required for seed differentiation. We sequenced messenger RNA populations of specific soybean seed compartments, which will provide new insights into gene expression that are important for “making a soybean seed.”
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| Overall design |
Eight compartments of the heart stage of the soybean seeds were analyzed. Three biological replicates were collected for each compartment.
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| Contributor(s) |
Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 06, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
John Harada |
| E-mail(s) |
jjharada@ucdavis.edu
|
| Organization name |
University of California
|
| Department |
Plant Biology
|
| Lab |
Harada lab
|
| Street address |
One Shields Avenue
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
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| Platforms (1) |
| GPL15008 |
Illumina HiSeq 2000 (Glycine max) |
|
| Samples (24)
|
| GSM1380799 |
Soybean Heart Stage Embryo Proper-Biological replicate 1 |
| GSM1380800 |
Soybean Heart Stage Embryo Proper-Biological replicate 2 |
| GSM1380801 |
Soybean Heart Stage Embryo Proper-Biological replicate 3 |
| GSM1380802 |
Soybean Heart Stage Endosperm-Biological replicate 1 |
| GSM1380803 |
Soybean Heart Stage Endosperm-Biological replicate 2 |
| GSM1380804 |
Soybean Heart Stage Endosperm-Biological replicate 3 |
| GSM1380805 |
Soybean Heart Stage Seed Coat Endothelium-Biological replicate 1 |
| GSM1380806 |
Soybean Heart Stage Seed Coat Endothelium-Biological replicate 3 |
| GSM1380807 |
Soybean Heart Stage Seed Coat Endothelium-Biological replicate 4 |
| GSM1380808 |
Soybean Heart Stage Seed Coat Epidermis-Biological replicate 1 |
| GSM1380809 |
Soybean Heart Stage Seed Coat Epidermis-Biological replicate 2 |
| GSM1380810 |
Soybean Heart Stage Seed Coat Epidermis-Biological replicate 3 |
| GSM1380811 |
Soybean Heart Stage Seed Coat Hilum-Biological replicate 1 |
| GSM1380812 |
Soybean Heart Stage Seed Coat Hilum-Biological replicate 2 |
| GSM1380813 |
Soybean Heart Stage Seed Coat Hilum-Biological replicate 3 |
| GSM1380814 |
Soybean Heart Stage Seed Coat Inner Integument-Biological replicate 1 |
| GSM1380815 |
Soybean Heart Stage Seed Coat Inner Integument-Biological replicate 2 |
| GSM1380816 |
Soybean Heart Stage Seed Coat Inner Integument-Biological replicate 3 |
| GSM1380817 |
Soybean Heart Stage Seed Coat Outer Integument-Biological replicate 1 |
| GSM1380818 |
Soybean Heart Stage Seed Coat Outer Integument-Biological replicate 2 |
| GSM1380819 |
Soybean Heart Stage Seed Coat Outer Integument-Biological replicate 3 |
| GSM1380820 |
Soybean Heart Stage Suspensor-Biological replicate 1 |
| GSM1380821 |
Soybean Heart Stage Suspensor-Biological replicate 2 |
| GSM1380822 |
Soybean Heart Stage Suspensor-Biological replicate 3 |
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| This SubSeries is part of SuperSeries: |
| GSE116036 |
mRNA profiling of soybean seed regions and tissues at five developmental stages |
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| Relations |
| BioProject |
PRJNA246314 |
| SRA |
SRP041710 |
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