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Series GSE57349 Query DataSets for GSE57349
Status Public on May 07, 2014
Title Gene Expression Changes in the Development of the Soybean Seed-Globular Stage
Organism Glycine max
Experiment type Expression profiling by high throughput sequencing
Summary We investigated soybean seed development because (1) soybean seeds are a major source of food and fuel, (2) soybean seeds have been an excellent system for studying the basic processes controlling seed development for over three decades, and (3) new soybean genomic resources, including the sequence of the soybean genome and the gene expression profiles for all seed compartments, tissues, and cell types, can be used to gain new insights into the regulatory processes required for seed differentiation. We sequenced messenger RNA populations of specific soybean seed compartments, which will provide new insights into gene expression that are important for “making a soybean seed.”
 
Overall design Eight compartments of the globular stage of the soybean seeds were analyzed. Three or four biological replicates were collected for each compartment.
 
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
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Submission date May 06, 2014
Last update date Jun 20, 2018
Contact name John Harada
E-mail jjharada@ucdavis.edu
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (25)
GSM1380774 Soybean Globular Stage Embryo Proper-Biological replicate 4
GSM1380775 Soybean Globular Stage Embryo Proper-Biological replicate 5
GSM1380776 Soybean Globular Stage Embryo Proper-Biological replicate 6
This SubSeries is part of SuperSeries:
GSE116036 mRNA profiling of soybean seed regions and tissues at five developmental stages
Relations
BioProject PRJNA246315
SRA SRP041709

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57349_RAW.tar 6.4 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file

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