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Series GSE57332 Query DataSets for GSE57332
Status Public on Nov 15, 2014
Title Genome-wide profiling of Tbx6myc binding during zebrafish somitogenesis
Organism Danio rerio
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Identification of Tbx6 genomic binding sites during zebrafish somitogenesis in order to identify Tbx6 targets genes
 
Overall design Duplicate anti-myc ChIP samples with associated input for heat shocked Tg(hsp70l:tbx6Myc)v8 embryos, plus single paired anti-myc ChIP and input in wild type embryos - 3x ChIP samples; 3x input samples
 
Contributor(s) Windner SE, Ferguson C, Doris RA, Nelson AC, Oates AC, Wardle FC, Devoto SH
Citation(s) 25725067
Submission date May 06, 2014
Last update date May 15, 2019
Contact name Andrew Christopher Nelson
E-mail(s) a.nelson.1@warwick.ac.uk
Organization name University of Warwick
Department School of Life Sciences
Street address Gibbet Hill Campus
City Coventry
ZIP/Postal code CV4 7AL
Country United Kingdom
 
Platforms (1)
GPL16509 Illumina HiSeq 1000 (Danio rerio)
Samples (4)
GSM1379661 Tbx6myc_ChIP1
GSM1379662 Tbx6myc_input1
GSM1379663 WTmyc_ChIP
Relations
BioProject PRJNA246287
SRA SRP041698

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57332_RAW.tar 80.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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