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Series GSE56864 Query DataSets for GSE56864
Status Public on Apr 17, 2014
Title Effect of Methyl jasmonate of the Poplar root transcriptome
Organism Populus tremula x Populus alba
Experiment type Expression profiling by high throughput sequencing
Summary Illumina HiSeq technology was used to generate mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate. Samples were harvested after two weeks either from untreated control roots or from Methyl jasmonate treated roots. Paired-end (2X100bp) reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) using CLC Genomics Workbench 6.
 
Overall design mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate as well as from control roots were generated by paired-end (2X100bp) Illumina HiSeq sequencing. Four samples were sequenced per lane, two biological replicates per treatment.
 
Contributor(s) Wittulsky S, Veneault-Fourrey C, Martin F, Kohler A
Citation(s) 24847068
Submission date Apr 17, 2014
Last update date May 15, 2019
Contact name Annegret Kohler
E-mail(s) annegret.kohler@inra.fr
Phone +33 (0)383 394072
Organization name INRA
Department UMR 1136
Lab Interactions Arbres/Micro-organismes
Street address Centre INRA de Nancy
City Champenoux
ZIP/Postal code 54280
Country France
 
Platforms (1)
GPL18583 Illumina HiSeq 2000 (Populus tremula x Populus alba)
Samples (4)
GSM1370395 Control root 1
GSM1370396 Control root 2
GSM1370397 Methyl Jasmonate treated root 1
This SubSeries is part of SuperSeries:
GSE56865 Effect of Laccaria bicolor, MiSSP7 from L.bicolor and Jasmonic acid on the Poplar transcriptome
Relations
BioProject PRJNA244820
SRA SRP041243

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56864_RAW.tar 1.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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